BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1750.p
         (371 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311209|ref|YP_003775301.1| molybdenum cofactor biosynthesi...   657   0.0  
gi|300312938|ref|YP_003777030.1| molybdenum cofactor biosynthesi...   219   2e-58

>gi|300311209|ref|YP_003775301.1| molybdenum cofactor biosynthesis
           protein A [Herbaspirillum seropedicae SmR1]
          Length = 393

 Score =  657 bits (1696), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/371 (87%), Positives = 347/371 (93%)

Query: 1   MNKRVIPIVAARPAPFASKAGTVTPLAVQPSGWLSDSLGRPLHDLRISVTDRCNFRCVYC 60
           MN+RVIPIV  R A  AS+AG + P+AVQP+GWLSDSLGRPLHDLRISVTDRCNFRCVYC
Sbjct: 23  MNQRVIPIVDYRQAFPASEAGRLAPMAVQPTGWLSDSLGRPLHDLRISVTDRCNFRCVYC 82

Query: 61  MPKDVFDKQYQFLPHSDLLSFEELARVAAQFVAHGVRKIRLTGGEPLLRKNIETLIALLA 120
           MPKDVFDKQYQFLPHSDLL+FEEL RVAAQFVAHGVRKIRLTGGEPLLRKNIETLI +LA
Sbjct: 83  MPKDVFDKQYQFLPHSDLLTFEELTRVAAQFVAHGVRKIRLTGGEPLLRKNIETLIGMLA 142

Query: 121 ALRAPDGQAIDLTLTTNGTLLKQKAQALKDAGLQRVTVSLDSLDDASFRRMNDVDFPVAR 180
           ALR P+ + +DLTLTTNGTLLKQKAQALKDAGL+RVTVSLDSLDD  FRRMNDVDFPVAR
Sbjct: 143 ALRTPEDEPVDLTLTTNGTLLKQKAQALKDAGLKRVTVSLDSLDDEGFRRMNDVDFPVAR 202

Query: 181 VLEGIEAAHAAGLGPIKINMVVKKGVNDDQILPMARYFKGTPTILRFIEYMDVGSSNGWC 240
           VLEGI+AAHAAGLGP+KINMVVKKGVNDDQILPMARYFKGTP ILRFIEYMDVGSSNGW 
Sbjct: 203 VLEGIDAAHAAGLGPVKINMVVKKGVNDDQILPMARYFKGTPAILRFIEYMDVGSSNGWR 262

Query: 241 MDEVLPSREVVRRISAELPLQALDPNYTGETAERWRYVDGSGEIGVISSVTQAFCQDCSR 300
           MDEVLPS EVVR I+ E+PL+  DPNYTGETAERWRYVDGSGEIGVISSVTQAFCQDCSR
Sbjct: 263 MDEVLPSAEVVRLIATEMPLEVADPNYTGETAERWRYVDGSGEIGVISSVTQAFCQDCSR 322

Query: 301 ARLSTEGKVYTCLFASQGHDLRSIVRNGGSDAEIAGAIAALWGQRGDRYSELRSAMQATP 360
           ARLSTEG+VYTCLFAS+GHDLRSIVR+GGSDAEIAGAIAALWGQRGDRYSELRSA++  P
Sbjct: 323 ARLSTEGRVYTCLFASEGHDLRSIVRSGGSDAEIAGAIAALWGQRGDRYSELRSALREAP 382

Query: 361 ARKVEMSYIGG 371
            RKVEMSYIGG
Sbjct: 383 LRKVEMSYIGG 393


>gi|300312938|ref|YP_003777030.1| molybdenum cofactor biosynthesis
           enzyme A protein [Herbaspirillum seropedicae SmR1]
          Length = 333

 Score =  219 bits (558), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 133/324 (41%), Positives = 184/324 (56%), Gaps = 13/324 (4%)

Query: 27  AVQPSGWLSDSLGRPLHDLRISVTDRCNFRCVYCMPKDVFDKQYQFLPHSDLLSFEELAR 86
           +  P   L D  GR +  LRISVTDRC+ RC YC+PK        F    + L F+E++R
Sbjct: 4   STHPPAVLQDRFGRRISYLRISVTDRCDLRCSYCLPKG----HTGFEEPQNWLRFDEISR 59

Query: 87  VAAQFVAHGVRKIRLTGGEPLLRKNIETLIALLAALRAPDGQAIDLTLTTNGTLLKQKAQ 146
           V A F   G  ++RLTGGEPLLR+ + TL A L+AL   D    +L+L+TN T L + A 
Sbjct: 60  VVAAFARLGAGRVRLTGGEPLLRRGLATLAAQLSALPGVD----ELSLSTNATQLHKHAA 115

Query: 147 ALKDAGLQRVTVSLDSLDDASFRRMNDVDFPVARVLEGIEAAHAAGLGPIKINMVVKKGV 206
           +L+ AG+QR+ VSLDSLD A    +   D  +A V+ G+EAA AAG  PIKINMV+ +GV
Sbjct: 116 SLRAAGVQRINVSLDSLDRACSASITGRD-SLASVMSGLEAAKAAGFAPIKINMVLLRGV 174

Query: 207 NDDQILPMARYFKGTPTILRFIEYMDVGSSN-GWCMDEVLPSREVVRRISAELPLQALDP 265
           N+ ++  MA++      ILR IE M +G++       E+ P RE    + A   L+ L  
Sbjct: 175 NEQEVPQMAQFCFEHGFILRLIETMPMGATGRSSPALELGPLREA---LVARFGLRPLAA 231

Query: 266 NYTGETAERWRYVDGSGEIGVISSVTQAFCQDCSRARLSTEGKVYTCLFASQGHDLRSIV 325
              G  A  W   DG   IG IS ++Q FC  C+R RLS +G +Y CL   +  +LR ++
Sbjct: 232 ELGGGPARYWSTPDGRSTIGFISPISQHFCATCNRVRLSVDGTLYLCLGQEERFELRPLL 291

Query: 326 RNGGSDAEIAGAIAALWGQRGDRY 349
           R G  DA +  AI A    + +R+
Sbjct: 292 RAGIDDAGLESAIRAAIELKPERH 315


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,174,647
Number of extensions: 49371
Number of successful extensions: 174
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 170
Number of HSP's successfully gapped: 2
Length of query: 371
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 284
Effective length of database: 1,207,925
Effective search space: 343050700
Effective search space used: 343050700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)