BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1748.p
         (423 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311207|ref|YP_003775299.1| molybdopterin biosynthesis MoeA...   769   0.0  
gi|300311413|ref|YP_003775505.1| molybdopterin biosynthesis prot...   260   1e-70

>gi|300311207|ref|YP_003775299.1| molybdopterin biosynthesis MoeA
           protein [Herbaspirillum seropedicae SmR1]
          Length = 428

 Score =  769 bits (1986), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/423 (89%), Positives = 398/423 (94%)

Query: 1   LHDIVSCISGYDPHAMTVASAQAVIQEFITPIDTVEKLAIRSALSRVLAQDIISRIDVPA 60
           L+DIVSCISGYDPHAMTV  AQAVI+EFI PI+ VEKL IRSALSRVLAQDI+SRIDVPA
Sbjct: 6   LNDIVSCISGYDPHAMTVERAQAVIREFIHPIEAVEKLPIRSALSRVLAQDIVSRIDVPA 65

Query: 61  HDNSAMDGYALRGAEVAAGQQVRLQIIGAVHAGERFSGTVGPGQCVRIMTGAPMPTGCDT 120
           HDNSAMDGYALRG ++A G+++RLQIIG VHAG+RF+G VGPGQCVRIMTGAPMP GCDT
Sbjct: 66  HDNSAMDGYALRGEDLAEGRELRLQIIGEVHAGDRFTGQVGPGQCVRIMTGAPMPAGCDT 125

Query: 121 VIPQELTTDADAQAVTLPAGRVRPGDNRRLRGEDLALGSVALPRGRVLRPSDIGLLASLG 180
           VIPQELT DAD  AVT+P GRVR GDNRRLRGEDLALGSVALPRGR+LRPSDIGLLASLG
Sbjct: 126 VIPQELTVDADQSAVTVPPGRVRAGDNRRLRGEDLALGSVALPRGRILRPSDIGLLASLG 185

Query: 181 IAEVPVQRRLRVAFFSTGDELRSVGEPLEPGCVYDSNRYTLHGMLTRLGCDVLDMGVVPD 240
           +AE PVQRRLRVAFFSTGDELRSVGEPL+ GCVYDSNRYTLHGMLTRLGC+VLDMGVVPD
Sbjct: 186 LAEAPVQRRLRVAFFSTGDELRSVGEPLDEGCVYDSNRYTLHGMLTRLGCEVLDMGVVPD 245

Query: 241 DPAALEAAFRNACEEADAVITSGGVSVGEADYTKQIMASLGEMTFWKIAMRPGRPLAFGR 300
           DPAALEAAFR+ACEEADAVITSGGVSVG ADYTKQIMASLGEM FWKIAMRPGRPLAFGR
Sbjct: 246 DPAALEAAFRSACEEADAVITSGGVSVGAADYTKQIMASLGEMAFWKIAMRPGRPLAFGR 305

Query: 301 IQSRGRAAYLFGLPGNPVAVTVSFSFFVRDALLRLAGAEPKPLPRLRAKTATAIRKKAGR 360
           I+SRGR AYLFGLPGNPVAVTVSFSFFVRDALLRLAGAE KPLPRLR KTATAIRKKAGR
Sbjct: 306 IRSRGREAYLFGLPGNPVAVTVSFSFFVRDALLRLAGAEAKPLPRLRVKTATAIRKKAGR 365

Query: 361 TEYQRGILAPDDHGTWQVRLTGMQGSGILRSMSDANCIIELEHERGDVAAGEEVAVVLFD 420
           TEYQRGILAPDD G W VRLTGMQGSGILRSMSDANCIIELEH+RGDVAAGEEVAVVLFD
Sbjct: 366 TEYQRGILAPDDSGNWSVRLTGMQGSGILRSMSDANCIIELEHDRGDVAAGEEVAVVLFD 425

Query: 421 GLV 423
           GLV
Sbjct: 426 GLV 428


>gi|300311413|ref|YP_003775505.1| molybdopterin biosynthesis protein
           [Herbaspirillum seropedicae SmR1]
          Length = 425

 Score =  260 bits (665), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 174/420 (41%), Positives = 239/420 (56%), Gaps = 31/420 (7%)

Query: 17  TVASAQAVIQEFITPIDTVEKLAIRSALSRVLAQDIISRIDVPAHDNSAMDGYALRGAEV 76
           +V+ A   +     P+   E +    A  RVLA+ + + IDVP  DNS MDGYA+R A+ 
Sbjct: 23  SVSQALETLLSAAVPVAQREIIDTLDACERVLAEPVTASIDVPGMDNSQMDGYAVRAADC 82

Query: 77  AAGQQVRLQI---IGAVHAGERFSGTVGPGQCVRIMTGAPMPTGCDTVIPQELTTDADAQ 133
           A+GQ  RL++   I A H G+       PG   RI TGA MP G D V+ QE   +AD +
Sbjct: 83  ASGQ-ARLRVSQRIPAGHVGQPLE----PGTAARIFTGAMMPAGADAVVMQE-ACEADGE 136

Query: 134 AVTL---PAGRVRPGDNRRLRGEDLALGSVALPRGRVLRPSDIGLLASLGIAEVPVQRRL 190
            V +   PA     G+  R  GED+  GS  L  G  LRP ++GL AS+G A++ V RR+
Sbjct: 137 HVVIRHVPAA----GEWVRTIGEDIRQGSTILAAGTRLRPQELGLAASIGQAQLQVLRRV 192

Query: 191 RVAFFSTGDELRSVGEPLEPGCVYDSNRYTLHGMLTRLGCDVLDMGVVPDDPAALEAAFR 250
           RVA F TGDEL   G+PL+PG +Y+SNR+ L G+L +LGC V D G+VPD   A     R
Sbjct: 193 RVAVFFTGDELTMPGQPLKPGGIYNSNRFLLRGLLQKLGCQVSDFGIVPDSLQATRETLR 252

Query: 251 NACEEADAVITSGGVSVGEADYTKQIMASLGEMTFWKIAMRPGRPLAFGRIQSRGRA--- 307
            A  E D +ITSGGVSVGE D+ K  + + G +  W+IAM+PG+PLAFG+++ RG     
Sbjct: 253 EAAREHDLIITSGGVSVGEEDHVKPAVEAEGRINMWQIAMKPGKPLAFGQVR-RGEGTGE 311

Query: 308 AYLFGLPGNPVAVTVSFSFFVRDALLRLAGAEPKPLPRLRAKTATAIRKKAG----RTEY 363
           A+  GLPGNPV+  V+F  FVR  LLRL G     LPR  A    A+  +A     R + 
Sbjct: 312 AFFMGLPGNPVSSFVTFLLFVRPFLLRLQG-----LPR-EAVLPQAVALRADFDWPRADR 365

Query: 364 QRGILAPDDHGTWQVRLTGMQGSGILRSMSDANCIIELEHERGDVAAGEEVAVVLFDGLV 423
           ++  L    +    + L   QGS +L S + A+ +I+    +  +AAG+ V  + FD L+
Sbjct: 366 RQEFLRVRRNAQGGLDLFPSQGSAVLTSTAWADGLIDNPPGQ-TIAAGDMVQFLAFDHLL 424


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,340,149
Number of extensions: 59265
Number of successful extensions: 190
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 185
Number of HSP's successfully gapped: 2
Length of query: 423
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 335
Effective length of database: 1,203,190
Effective search space: 403068650
Effective search space used: 403068650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)