BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1747.p
         (488 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311206|ref|YP_003775298.1| hypothetical protein Hsero_1881...   795   0.0  

>gi|300311206|ref|YP_003775298.1| hypothetical protein Hsero_1881
           [Herbaspirillum seropedicae SmR1]
          Length = 455

 Score =  795 bits (2052), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/454 (89%), Positives = 428/454 (94%)

Query: 35  LLQLKQELQRHQQDTGERIERELRSQVQISAQGTRQELGANFAQLQQTLATQMSSVATLQ 94
           L  ++Q LQRHQQD GERIERELRSQVQ SAQ TRQELGA+FAQLQQTLATQM+SVA+LQ
Sbjct: 2   LAHMQQVLQRHQQDIGERIERELRSQVQASAQSTRQELGASFAQLQQTLATQMASVASLQ 61

Query: 95  NKQIDGFAQQLVKLNETNAQQLDHMRQSITLQAQVNREEQAVSLKRFGDTLNQQLSALTE 154
           N+QIDGFAQQLVKLNETNAQQLD MRQSITLQAQV+REEQAVSLKRFGDTLNQQLSALTE
Sbjct: 62  NQQIDGFAQQLVKLNETNAQQLDSMRQSITLQAQVSREEQAVSLKRFGDTLNQQLSALTE 121

Query: 155 SNAQRMAEVRATLEAKIKDLQNDNAQKLEEMRKTVDEKLHATLEQRLGESFKLVSDRLDK 214
           SNAQRM EVRATLEAKIKDLQ DNAQKL+EMRKTVDEKLHATLEQRLGESFKLVSDRLDK
Sbjct: 122 SNAQRMGEVRATLEAKIKDLQTDNAQKLDEMRKTVDEKLHATLEQRLGESFKLVSDRLDK 181

Query: 215 VHQGLGEMQQLATGVGDLKRVLTNVKTRGTWGEVQLEILLEQMLTPDQYAKNVETVPASG 274
           VHQGLGEMQQLATGVGDLKRVLTNVKTRGTWGEVQLEILLEQMLTP+QY KNVETV  SG
Sbjct: 182 VHQGLGEMQQLATGVGDLKRVLTNVKTRGTWGEVQLEILLEQMLTPEQYGKNVETVRGSG 241

Query: 275 ERVEFAIRLPGAKEDGGQVWMPIDAKFPKEQYERLVDAAERADAEGVATAGRELERAVRG 334
           ERVEFAIRLPGAKE+G  VWMPIDAKFPKEQYERLV+AAERADA+GVA AG+ELERAVR 
Sbjct: 242 ERVEFAIRLPGAKEEGEPVWMPIDAKFPKEQYERLVEAAERADADGVAAAGKELERAVRT 301

Query: 335 EAKTIAEKYLSPPLTTDFAILFLPTEGLYAEVMRRPGLSDELQRTHRVTIAGPSTLSALL 394
           EA+TIAEKYLSPPLTTDFAILFLPTEGLYAEVMRRPGLSD+LQR+ RVTIAGPSTLSALL
Sbjct: 302 EARTIAEKYLSPPLTTDFAILFLPTEGLYAEVMRRPGLSDDLQRSCRVTIAGPSTLSALL 361

Query: 395 NSLQMGFRTLALEKRSSEVWQVLGAVKTEFGKFGEVLASTKSALERVAKNIDQAETRTRQ 454
           NSLQMGFRTLALEKRSSEVWQVLGAVKTEFGKFGEVLASTK+ALER A+NIDQAETRTRQ
Sbjct: 362 NSLQMGFRTLALEKRSSEVWQVLGAVKTEFGKFGEVLASTKTALERAARNIDQAETRTRQ 421

Query: 455 MTRKLKAVEALPVENAQKLLGTGELDLGEDAEGV 488
           MTRKLK+VEALP + AQKLLG  E +LGE  E +
Sbjct: 422 MTRKLKSVEALPADAAQKLLGAAEPELGESDEAL 455


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.129    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,208,891
Number of extensions: 47272
Number of successful extensions: 193
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 399
Effective length of database: 1,198,455
Effective search space: 478183545
Effective search space used: 478183545
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 132 (55.5 bits)