BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1738.p
         (468 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311198|ref|YP_003775290.1| PP-loop superfamily ATPase [Her...   693   0.0  

>gi|300311198|ref|YP_003775290.1| PP-loop superfamily ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 449

 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/449 (79%), Positives = 390/449 (86%), Gaps = 4/449 (0%)

Query: 24  LAATGFDVERDTLAVAYSGGLDSTVLLQVAAQWAQDSGG--QVVALHVHHGLSANADAWL 81
           ++A+GFD   DTLAVAYSGGLDSTVLL VAAQWA+++GG  ++  LHVHHGLS +ADAWL
Sbjct: 1   MSASGFDAAHDTLAVAYSGGLDSTVLLWVAAQWARENGGTSRLAPLHVHHGLSPHADAWL 60

Query: 82  AHAQAFCAQRGVLCASERVQVANVAETGIEEAARLARYAALGRLCRQHGAPLLLTAHHLD 141
           AHAQA CAQ G++  SERVQ+  VA++G+EEAARLARYAALGRLCRQ GA +LLTAHHLD
Sbjct: 61  AHAQACCAQLGLVLQSERVQLEGVADSGVEEAARLARYAALGRLCRQQGARVLLTAHHLD 120

Query: 142 DQAETVLLQLLRGSGLAGMSGMDHCNTAPGLLGDAHTLVVRPFLGVPRAQLEAVARALAL 201
           DQAETVLLQLLRGSGLAG+SGMD CNTAP LLGD   L+ RPFLGV RAQLEAVA A++L
Sbjct: 121 DQAETVLLQLLRGSGLAGLSGMDRCNTAPALLGDDRLLMARPFLGVTRAQLEAVADAMSL 180

Query: 202 VWIEDESNQDPRYTRNALRHQVMPTLGQVFPGYQQRLARAAGHAQGAQELLREVAQQDLA 261
            WIEDESN DPRYTRNALRHQVMP LGQVFPGYQQRLARAAGHAQGAQELLREVA+QDLA
Sbjct: 181 KWIEDESNSDPRYTRNALRHQVMPALGQVFPGYQQRLARAAGHAQGAQELLREVAEQDLA 240

Query: 262 QCRQDDHLLMPALRGLSEQRFLNLMRHWFALRGMRMPSAAWMQEMRSQLLQADVEAQLCV 321
            CR+D+HL MP LR LSEQRFLNLMRHWF LRGMRMPSAAWMQEMR QLLQADVEAQLCV
Sbjct: 241 HCREDEHLRMPPLRELSEQRFLNLMRHWFGLRGMRMPSAAWMQEMRHQLLQADVEAQLCV 300

Query: 322 SHPDGEVHRYRERVFLAPRRIAPDEGASLSLRWEGQAQVRVAAFYGTLHFDSIASDEVRP 381
           SHPDGEVHRYRERVFLAPRR+ PDEGA  +LRW+GQAQ R+ A+YGTLHFD I  D+ RP
Sbjct: 301 SHPDGEVHRYRERVFLAPRRMPPDEGAVATLRWDGQAQWRLPAWYGTLHFDRIGGDDARP 360

Query: 382 GLDATWLRSQALLVCGRSGGERIKLGVNRPARSLKQQYQSADVPAWERPFLPLVWAGETL 441
           G D  WL+ Q+LL CGRSGGERI+L  NRPARSLKQQYQSADVPAWERP+LPLVWAGE+L
Sbjct: 361 GFDPAWLQGQSLLACGRSGGERIRLAANRPARSLKQQYQSADVPAWERPYLPLVWAGESL 420

Query: 442 LFAAGIGMDSAHLVTS--GERIALRWQPD 468
           LFAAGIGMD      S   +RIALRWQPD
Sbjct: 421 LFAAGIGMDCGQFAPSATAQRIALRWQPD 449


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.133    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,533,059
Number of extensions: 64936
Number of successful extensions: 230
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 228
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 379
Effective length of database: 1,198,455
Effective search space: 454214445
Effective search space used: 454214445
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)