BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1732.p
         (399 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311193|ref|YP_003775285.1| hypothetical protein Hsero_1868...   748   0.0  

>gi|300311193|ref|YP_003775285.1| hypothetical protein Hsero_1868
           [Herbaspirillum seropedicae SmR1]
          Length = 399

 Score =  748 bits (1931), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/399 (91%), Positives = 385/399 (96%)

Query: 1   MLCLAAMPAMGSVASSSSIPPQGNTAGAPTAKPDPEALLIDIYKDLGANRLREAQAKADA 60
           MLCLA +P++GSVASSSSIPPQ   AGAP AKPDPEALLIDIYKDLGANRLREAQAKADA
Sbjct: 1   MLCLAGLPSVGSVASSSSIPPQSAPAGAPVAKPDPEALLIDIYKDLGANRLREAQAKADA 60

Query: 61  LVAAYPTFRLGHLVRGDLLLMHARPVRNFGAMADGPADKLQELRDEAMVRIRSLQEKPDP 120
           LVAAYPTFRLGHLVRGDLLLMHARPVRNFGAMADGPADKL+ELRDEAMVRIRSLQEKPDP
Sbjct: 61  LVAAYPTFRLGHLVRGDLLLMHARPVRNFGAMADGPADKLKELRDEAMVRIRSLQEKPDP 120

Query: 121 NLIPKSVLQVGDDQKNVLVVDTTRSRMYVYENQDGDLKYMTDYYISQGRLGANKTKSGDQ 180
           NLIPK+VLQVG+DQKNVLVVDTTRSRMYVYENQ G+LK+ TD+YISQGR GANK+KSGDQ
Sbjct: 121 NLIPKAVLQVGEDQKNVLVVDTTRSRMYVYENQGGELKFQTDFYISQGRFGANKSKSGDQ 180

Query: 181 RTPIGVYYVNNRIPGPKLPDFYGTGALPLSYPNEWDKRNGRSGYGIWLHGTPSDNFSRPP 240
           RTPIGVYYVNNRIPGPKLPDFYGTGALPLSYPNEWDKRNGRSGYGIWLHGTPSDNFSRPP
Sbjct: 181 RTPIGVYYVNNRIPGPKLPDFYGTGALPLSYPNEWDKRNGRSGYGIWLHGTPSDNFSRPP 240

Query: 241 LSSDGCVVLANPDLQSLYSTAEVGKTVVVISQNVQFVNKNSLTKERDAASAMLEQWSQSL 300
           LSSDGCVVLANPDLQSLYSTAEVGKTVVVISQ+VQFV+KN   ++RDAASA+LEQW QSL
Sbjct: 241 LSSDGCVVLANPDLQSLYSTAEVGKTVVVISQHVQFVDKNEWARQRDAASAILEQWGQSL 300

Query: 301 EDADADKVLSYYSPEFRSAQGENLATWFGRQQKSLNGARYTSVKLRDVSLFRYPGAPEDM 360
           E+AD +KVLSYYSPEFRSAQGE+LATWFGRQQKSLNGARYTSVKLRDVSLFRYPG PEDM
Sbjct: 301 ENADPEKVLSYYSPEFRSAQGESLATWFGRQQKSLNGARYTSVKLRDVSLFRYPGTPEDM 360

Query: 361 IVSTFTQESAVGKSKNAIRKRQYWVREGSQWKIIYEGNA 399
           IVSTFTQESAVGKSKNAIRKRQYWVREGSQWKIIYEGNA
Sbjct: 361 IVSTFTQESAVGKSKNAIRKRQYWVREGSQWKIIYEGNA 399


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.132    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,329,560
Number of extensions: 57697
Number of successful extensions: 108
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 312
Effective length of database: 1,207,925
Effective search space: 376872600
Effective search space used: 376872600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 131 (55.1 bits)