BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1731.p
         (189 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311192|ref|YP_003775284.1| peptidyl-prolyl cis/trans isome...   360   e-101
gi|300311191|ref|YP_003775283.1| peptidyl-prolyl cis/trans isome...   219   1e-58

>gi|300311192|ref|YP_003775284.1| peptidyl-prolyl cis/trans
           isomerase [Herbaspirillum seropedicae SmR1]
          Length = 189

 Score =  360 bits (923), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 170/189 (89%), Positives = 183/189 (96%)

Query: 1   MILSRRHLLRMAAALSLSTTLAAPVLAADAPHVLLKTSMGNITLELNPEKAPVSVDNFLK 60
           MILSRRHLLRMAAALSLST LA P LAADAP VLLKTSMG+IT+ELNPEKAPVSV+NFLK
Sbjct: 1   MILSRRHLLRMAAALSLSTALAVPALAADAPRVLLKTSMGDITVELNPEKAPVSVENFLK 60

Query: 61  YVKKGQYNGTVFHRVINGFMIQGGGYDQNMREKPTDAPIKNEANNGLKNEVYTVAMARTA 120
           YVKKGQYNGTVFHRVINGFMIQGGG DQN+REKPTDAPIKNEANNGLKNEVYT+AMART+
Sbjct: 61  YVKKGQYNGTVFHRVINGFMIQGGGMDQNLREKPTDAPIKNEANNGLKNEVYTIAMARTS 120

Query: 121 APHSATAQFFINVADNRFLNYPGQDGWGYAVFGKVIAGADVVDKIKQVRTGAGDVPTTPV 180
           APHSATAQFFINVA+NRFL+YPGQDGWGYAVFGKV+AG +VVDKIKQVRTGAGDVP+TPV
Sbjct: 121 APHSATAQFFINVANNRFLDYPGQDGWGYAVFGKVVAGTEVVDKIKQVRTGAGDVPSTPV 180

Query: 181 VIESATVIK 189
           VIESAT++K
Sbjct: 181 VIESATLVK 189


>gi|300311191|ref|YP_003775283.1| peptidyl-prolyl cis/trans
           isomerase [Herbaspirillum seropedicae SmR1]
          Length = 162

 Score =  219 bits (558), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 107/160 (66%), Positives = 127/160 (79%), Gaps = 4/160 (2%)

Query: 33  VLLKTSMGNITLELNPEKAPVSVDNFLKYVKKGQYNGTVFHRVINGFMIQGGGYDQNMRE 92
           VLL T+ G I +EL+ EKAP +V+NFL YV  G YNGT+FHRVI+GFMIQGGG++  M++
Sbjct: 3   VLLTTNHGTIKIELDAEKAPKTVENFLAYVNAGHYNGTIFHRVIDGFMIQGGGFEPGMKQ 62

Query: 93  KPTDAPIKNEANNGLKNEVYTVAMARTAAPHSATAQFFINVADNRFLNYPGQDGWGYAVF 152
           K T  PI+NEA NGLKNE YT+AMARTAAPHSA+AQFFINV +N FL+YPGQDGWGY VF
Sbjct: 63  KETREPIENEAKNGLKNEPYTLAMARTAAPHSASAQFFINVKNNSFLDYPGQDGWGYCVF 122

Query: 153 GKVIAGADVVDKIKQVRTG-AG---DVPTTPVVIESATVI 188
           GKV+ G +VVDKIK V+T  AG   DVP   VVIE A V+
Sbjct: 123 GKVVEGTEVVDKIKGVKTTRAGMFADVPAEDVVIEKAEVV 162


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 512,225
Number of extensions: 20468
Number of successful extensions: 50
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 2
Length of query: 189
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 109
Effective length of database: 1,241,070
Effective search space: 135276630
Effective search space used: 135276630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)