BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1730.p
         (162 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311191|ref|YP_003775283.1| peptidyl-prolyl cis/trans isome...   332   1e-92
gi|300311192|ref|YP_003775284.1| peptidyl-prolyl cis/trans isome...   224   3e-60

>gi|300311191|ref|YP_003775283.1| peptidyl-prolyl cis/trans
           isomerase [Herbaspirillum seropedicae SmR1]
          Length = 162

 Score =  332 bits (851), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 160/162 (98%), Positives = 161/162 (99%)

Query: 1   MAVLLTTNHGTIKIELDAEKAPKTVENFLAYVNAGHYNGTIFHRVIDGFMIQGGGFEPGM 60
           MAVLLTTNHGTIKIELDAEKAPKTVENFLAYVNAGHYNGTIFHRVIDGFMIQGGGFEPGM
Sbjct: 1   MAVLLTTNHGTIKIELDAEKAPKTVENFLAYVNAGHYNGTIFHRVIDGFMIQGGGFEPGM 60

Query: 61  KQKETREPIENEAKNGLKNEPYTLAMARTAAPHSASAQFFINVKNNSFLDYPGQDGWGYC 120
           KQKETREPIENEAKNGLKNEPYTLAMARTAAPHSASAQFFINVKNNSFLDYPGQDGWGYC
Sbjct: 61  KQKETREPIENEAKNGLKNEPYTLAMARTAAPHSASAQFFINVKNNSFLDYPGQDGWGYC 120

Query: 121 VFGKVVEGTEVVDKIKGVKTTRTGMFADVPAEDVLIEKAEVV 162
           VFGKVVEGTEVVDKIKGVKTTR GMFADVPAEDV+IEKAEVV
Sbjct: 121 VFGKVVEGTEVVDKIKGVKTTRAGMFADVPAEDVVIEKAEVV 162


>gi|300311192|ref|YP_003775284.1| peptidyl-prolyl cis/trans
           isomerase [Herbaspirillum seropedicae SmR1]
          Length = 189

 Score =  224 bits (571), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 110/160 (68%), Positives = 127/160 (79%), Gaps = 4/160 (2%)

Query: 3   VLLTTNHGTIKIELDAEKAPKTVENFLAYVNAGHYNGTIFHRVIDGFMIQGGGFEPGMKQ 62
           VLL T+ G I +EL+ EKAP +VENFL YV  G YNGT+FHRVI+GFMIQGGG +  +++
Sbjct: 33  VLLKTSMGDITVELNPEKAPVSVENFLKYVKKGQYNGTVFHRVINGFMIQGGGMDQNLRE 92

Query: 63  KETREPIENEAKNGLKNEPYTLAMARTAAPHSASAQFFINVKNNSFLDYPGQDGWGYCVF 122
           K T  PI+NEA NGLKNE YT+AMART+APHSA+AQFFINV NN FLDYPGQDGWGY VF
Sbjct: 93  KPTDAPIKNEANNGLKNEVYTIAMARTSAPHSATAQFFINVANNRFLDYPGQDGWGYAVF 152

Query: 123 GKVVEGTEVVDKIKGVKTTRTGMFADVPAEDVLIEKAEVV 162
           GKVV GTEVVDKIK V   RTG   DVP+  V+IE A +V
Sbjct: 153 GKVVAGTEVVDKIKQV---RTGA-GDVPSTPVVIESATLV 188


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 491,301
Number of extensions: 19056
Number of successful extensions: 50
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 2
Length of query: 162
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 84
Effective length of database: 1,250,540
Effective search space: 105045360
Effective search space used: 105045360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)