BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1729.p
         (263 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311190|ref|YP_003775282.1| UDP-2,3-diacylglucosamine hydro...   484   e-138

>gi|300311190|ref|YP_003775282.1| UDP-2,3-diacylglucosamine
           hydrolase [Herbaspirillum seropedicae SmR1]
          Length = 263

 Score =  484 bits (1246), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 236/263 (89%), Positives = 240/263 (91%)

Query: 1   MTDFQFMQKAQPTVALFVSDLHLQAGLPRTTEAFLAFLQSHAVQTQQLYLLGDVFEYWAG 60
           MTDFQFMQKAQPTVALFVSDLHLQA LPRTT AFLAFLQSHA QTQQLYLLGD+FEYWAG
Sbjct: 1   MTDFQFMQKAQPTVALFVSDLHLQASLPRTTAAFLAFLQSHAAQTQQLYLLGDIFEYWAG 60

Query: 61  DDDLTAPYNQLIADALKTVQVQGVQLYWMAGNRDFLVGQGFATAAGLTLLDDPHVVTLAG 120
           DDDL  PYNQ IADALK +Q QGVQLYWMAGNRDFLVGQ FA AAGLTLL DPHV+T AG
Sbjct: 61  DDDLATPYNQFIADALKALQAQGVQLYWMAGNRDFLVGQAFADAAGLTLLQDPHVITAAG 120

Query: 121 RTLALAHGDAQCTDDLAYMAFRAQVRQPAYQQQFLAMPLAQRKAIIEGIRKNSQDANQSK 180
           R L LAHGDAQCTDD AYMAFRAQVRQPAYQQQFLAMPLAQRKAIIEGIRKNSQDANQSK
Sbjct: 121 RRLTLAHGDAQCTDDHAYMAFRAQVRQPAYQQQFLAMPLAQRKAIIEGIRKNSQDANQSK 180

Query: 181 EMAIMDVNAGAIDALFAQTGTDVLIHGHTHRPALHRLGEGEQCKLRYVLPDWEYDVATPR 240
           EMAIMDVNAGAID LFAQTGTD LIHGHTHRPALHRLGEG   KLRYVLPDWEYDV TPR
Sbjct: 181 EMAIMDVNAGAIDTLFAQTGTDTLIHGHTHRPALHRLGEGPAGKLRYVLPDWEYDVETPR 240

Query: 241 GGWISLTADGVLHRHDVDGHEIA 263
           GGWISLTADG LHRHDV+G EIA
Sbjct: 241 GGWISLTADGALHRHDVNGDEIA 263


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 881,939
Number of extensions: 37831
Number of successful extensions: 126
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 180
Effective length of database: 1,226,865
Effective search space: 220835700
Effective search space used: 220835700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)