BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1728.p (252 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311189|ref|YP_003775281.1| serine O-acetyltransferase [Her... 471 e-134 gi|300311650|ref|YP_003775742.1| serine O-acetyltransferase [Her... 142 4e-35 gi|300310909|ref|YP_003775001.1| serine O-acetyltransferase [Her... 137 9e-34 gi|300311326|ref|YP_003775418.1| serine O-acetyltransferase [Her... 70 2e-13 gi|300313481|ref|YP_003777573.1| isoleucine patch superfamily ac... 56 3e-09 >gi|300311189|ref|YP_003775281.1| serine O-acetyltransferase [Herbaspirillum seropedicae SmR1] Length = 250 Score = 471 bits (1213), Expect = e-134, Method: Compositional matrix adjust. Identities = 233/252 (92%), Positives = 240/252 (95%), Gaps = 2/252 (0%) Query: 1 MFSRLREDIASIRARDPAARNSWEVLTCYPGLHAVILHRWAQACWNAELKWLGRFISQLG 60 MFSRLREDIASIRARDPAARNSWEVLTCYPGLHA+ILHRWA+ACW A+LKWLGRFISQLG Sbjct: 1 MFSRLREDIASIRARDPAARNSWEVLTCYPGLHALILHRWAKACWQAQLKWLGRFISQLG 60 Query: 61 RTLTGIEIHPGATIGRRVFIDHGMGVVIGETAIVGDDSTIYQGVTLGGTSLTKGAKRHPT 120 R LTGIEIHPGATIGRRVFIDHGMGVVIGETAIVGDDSTIYQGVTLGGTSL KGAKRHPT Sbjct: 61 RMLTGIEIHPGATIGRRVFIDHGMGVVIGETAIVGDDSTIYQGVTLGGTSLVKGAKRHPT 120 Query: 121 LGRGVIIGAGAKVLGGFTVGDGAKVGSNAVVTKEVPAGATAVGNPARIVERNTAQAGERE 180 LGRGVIIGAGAKVLGGFTVGDGAKVGSNAVVTKEVPAG TAVGNPARI+ERNT A Sbjct: 121 LGRGVIIGAGAKVLGGFTVGDGAKVGSNAVVTKEVPAGTTAVGNPARIIERNTVSA--EP 178 Query: 181 QQAAARLFAAYGVMPNGDDPLSKALHGLINQVAAQEQQLEAVLAALQGAGIGCRRMEEAG 240 QAAARLFAAYGVMPNGDDPLSKALHGLINQVAAQEQQL+ +LAALQGAGIGCRR+EEAG Sbjct: 179 DQAAARLFAAYGVMPNGDDPLSKALHGLINQVAAQEQQLQVMLAALQGAGIGCRRLEEAG 238 Query: 241 QFDAAQLNRLVD 252 QFDAAQLNRLVD Sbjct: 239 QFDAAQLNRLVD 250 >gi|300311650|ref|YP_003775742.1| serine O-acetyltransferase [Herbaspirillum seropedicae SmR1] Length = 307 Score = 142 bits (357), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 79/165 (47%), Positives = 100/165 (60%), Gaps = 8/165 (4%) Query: 3 SRLREDIASIRARDPAARNSWEVLTCYPGLHAVILHRWAQACWNAELKWLGRFISQLGRT 62 S+L D+ + DPAAR+ EVL CYPG A+I +R A + L L R I++L Sbjct: 124 SQLDTDVLAAYQGDPAARSVDEVLLCYPGALAMIHYRLAHRLYQLGLPLLARIIAELAHA 183 Query: 63 LTGIEIHPGATIGRRVFIDHGMGVVIGETAIVGDDSTIYQGVTLGGT--------SLTKG 114 TGI+IHPGA IG FIDHG GVVIGETA++G++ IYQ VTLG L KG Sbjct: 184 ATGIDIHPGAQIGTGFFIDHGTGVVIGETAVIGNNVRIYQAVTLGAKRFPTDADGKLEKG 243 Query: 115 AKRHPTLGRGVIIGAGAKVLGGFTVGDGAKVGSNAVVTKEVPAGA 159 RHP + V+I AGA +LG +G GA +G N +T +VPAGA Sbjct: 244 RARHPIVEDDVVIYAGATILGRIRLGRGAVIGGNVWLTHDVPAGA 288 >gi|300310909|ref|YP_003775001.1| serine O-acetyltransferase [Herbaspirillum seropedicae SmR1] Length = 311 Score = 137 bits (345), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 74/163 (45%), Positives = 94/163 (57%), Gaps = 8/163 (4%) Query: 5 LREDIASIRARDPAARNSWEVLTCYPGLHAVILHRWAQACWNAELKWLGRFISQLGRTLT 64 L DI + DPAA + E+L CYPG A+I HR A A L R I+ + + T Sbjct: 135 LVSDIQAAYHGDPAASSISEILLCYPGTTAIIYHRLAHALHQLGAPLLARLIADIAHSAT 194 Query: 65 GIEIHPGATIGRRVFIDHGMGVVIGETAIVGDDSTIYQGVTLGGT--------SLTKGAK 116 GI+IHP A IG FIDHG GVVIGET I+G + +YQ VTLG SL KG Sbjct: 195 GIDIHPAAQIGPSFFIDHGTGVVIGETTIIGRNVRLYQAVTLGAKRFPQEPDGSLVKGIP 254 Query: 117 RHPTLGRGVIIGAGAKVLGGFTVGDGAKVGSNAVVTKEVPAGA 159 RHP + V++ AGA +LG T+G G+ +G N +T VPAG+ Sbjct: 255 RHPIVEDDVVVYAGATLLGRITIGRGSVIGGNVWLTHSVPAGS 297 >gi|300311326|ref|YP_003775418.1| serine O-acetyltransferase [Herbaspirillum seropedicae SmR1] Length = 188 Score = 70.1 bits (170), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 46/115 (40%), Positives = 65/115 (56%), Gaps = 3/115 (2%) Query: 58 QLGRTLTGIEIHPGATIGRRVFIDHGMGVVIGETAIVGDDSTIYQGVTLGGTSLTKGAKR 117 +L T+ GI + A IG + I H + + ++G T+ QGVT+G + Sbjct: 59 RLVETVFGISLPRTARIGPGLRIWHFGNIFLHGDVVIGAGCTLRQGVTIGNR---REGGP 115 Query: 118 HPTLGRGVIIGAGAKVLGGFTVGDGAKVGSNAVVTKEVPAGATAVGNPARIVERN 172 P LG V +GA A+VLG +GDG KVG+ +VV +VP GATAVG PAR++ R Sbjct: 116 VPVLGDNVELGAYAQVLGAVHLGDGCKVGAMSVVLDDVPPGATAVGAPARVIART 170 >gi|300313481|ref|YP_003777573.1| isoleucine patch superfamily acetyltransferase [Herbaspirillum seropedicae SmR1] Length = 188 Score = 56.2 bits (134), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 42/123 (34%), Positives = 60/123 (48%), Gaps = 20/123 (16%) Query: 63 LTGIEIHPGATIGRRVFIDHGMGVVIGETAIVGDDSTIYQGVTL-----GGTSLT----- 112 +G I + G+ VF+ G V+IG V ++ +IY VTL G S+ Sbjct: 30 CSGARIGERCSFGQNVFV--GNDVLIGNNVKVQNNVSIYDAVTLEDDVFCGPSMVFTNVN 87 Query: 113 --------KGAKRHPTLGRGVIIGAGAKVLGGFTVGDGAKVGSNAVVTKEVPAGATAVGN 164 K R + RG IGA A ++ G +G+ A +G+ AVVT++VPA A VG Sbjct: 88 NPRSAVSRKHEYRRTLVRRGASIGANATIVCGHEIGEYAFIGAGAVVTRDVPAYALMVGT 147 Query: 165 PAR 167 PAR Sbjct: 148 PAR 150 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.136 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 779,744 Number of extensions: 33652 Number of successful extensions: 169 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 158 Number of HSP's successfully gapped: 5 Length of query: 252 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 169 Effective length of database: 1,226,865 Effective search space: 207340185 Effective search space used: 207340185 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)