BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1721.p (515 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra... 514 e-147 gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 498 e-142 gi|300310594|ref|YP_003774686.1| methyl-accepting chemotaxis pro... 452 e-128 gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis pro... 448 e-127 gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis tra... 446 e-126 >gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 514 bits (1323), Expect = e-147, Method: Compositional matrix adjust. Identities = 300/509 (58%), Positives = 370/509 (72%) Query: 5 NMTIGTRLGLGFATILALMAMITGIGVWRLQEVSKLNDAMVNDALVKERLVNTFYKSIEV 64 NM IG RL LGFA IL +I GIG+WRL V++ M+ + L ERL+ +Y ++ Sbjct: 6 NMNIGRRLTLGFALILTFSIIIAGIGLWRLDHVAQATREMMAEPLKTERLMADWYTNLVA 65 Query: 65 NIGRIVAAAKNPDVEQQKFYKQQIMSVISKNNELVKRMDELFTDEAGRAALNAINERRKS 124 I R +A AK+ D ++ ++ + + E K+++ L + +A I E RK Sbjct: 66 GIRRTIAIAKSSDPALGPYFAAEVAASSKSSGEYQKQVEALLSTPEEKALFQKIGELRKL 125 Query: 125 VLEANTEVFKEKDAGNEQAARKVVDEKLLPSTQLYIAAIEKLASMQAERIQILTAQIDDL 184 L + E+ K K AGN + A +++D+ +P+ Y + KL Q + + +ID + Sbjct: 126 YLSSRDEINKAKAAGNTEEAMRILDQVFVPNATAYQDTMRKLVDFQRKEMDDTAREIDAI 185 Query: 185 FQTARKVMIGLGLVALLLGVILAWSITRSITAPLHKAVEVASRVAKGQLDNCIEVRGGDE 244 +R +++ L + LLLG++ A +T IT PLH+AV+V+ VA+G L + I V DE Sbjct: 186 AAKSRTLILVLEGLILLLGIVFARYLTLGITKPLHRAVDVSRCVAEGDLSSEIAVTSRDE 245 Query: 245 TGQLMLALKDMNEKLVGIVSRVRQGTDTIATASTEIASGNLDLSDRTEQQASSLEETASA 304 TGQL+ +LKDMN+ L GIVS VR GTDTI+TAS+EIA+GNLDLS RTEQQASSL ETASA Sbjct: 246 TGQLLQSLKDMNQSLRGIVSNVRSGTDTISTASSEIAAGNLDLSSRTEQQASSLAETASA 305 Query: 305 MEELTSTVKQNADNARQANQLANSASEVAVQGGSVVSEVVATMGSINASSRKIVDIIAVI 364 MEEL STV+QNADNARQA+QLANSAS VA QGG VVS+VV TMG+INASSRKIVDII+VI Sbjct: 306 MEELISTVRQNADNARQASQLANSASAVAEQGGGVVSQVVDTMGAINASSRKIVDIISVI 365 Query: 365 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELIGDSVGKV 424 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELI DSVGKV Sbjct: 366 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELINDSVGKV 425 Query: 425 EAGSKLVEQAGATMDEVVASVRRVTDIVAEISSASQEQSDGIEQVNQAINLMDEATQQNA 484 + GS+LVEQAG TM EVV+SVRRVTDIVAEIS+AS EQ+ GIEQ+N AI MD+ TQQNA Sbjct: 426 DDGSRLVEQAGNTMQEVVSSVRRVTDIVAEISAASTEQTHGIEQINLAITQMDQVTQQNA 485 Query: 485 ALVEQAAAAARQMQEQAASLSETVSVFRL 513 ALVE+AAAAA MQ QA L + VSVFRL Sbjct: 486 ALVEEAAAAAASMQTQAGRLMQMVSVFRL 514 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 498 bits (1283), Expect = e-142, Method: Compositional matrix adjust. Identities = 289/512 (56%), Positives = 367/512 (71%) Query: 3 MKNMTIGTRLGLGFATILALMAMITGIGVWRLQEVSKLNDAMVNDALVKERLVNTFYKSI 62 MKN+ IG RL +GF +L LMA++ +GVWRL + D M AL KER ++ +I Sbjct: 1 MKNLKIGVRLAIGFIALLMLMAVMVALGVWRLGSIGDATDDMTRIALKKERDAVQWHAAI 60 Query: 63 EVNIGRIVAAAKNPDVEQQKFYKQQIMSVISKNNELVKRMDELFTDEAGRAALNAINERR 122 + N R A K+ D Q ++++QI + ++ ++L K ++ TD + + + + R Sbjct: 61 KENGVRTFAVMKSDDDAFQAYFQKQIDAQSARISQLQKEVEAAITDAEEKRLFDEVGKLR 120 Query: 123 KSVLEANTEVFKEKDAGNEQAARKVVDEKLLPSTQLYIAAIEKLASMQAERIQILTAQID 182 + +F K AG++ AR++ D L+ Y + + A Q + I A I+ Sbjct: 121 AAYRATRQSIFDVKTAGDDARAREMTDTTLVKMMDDYADGVLRYADFQKQVIDQTAAAIN 180 Query: 183 DLFQTARKVMIGLGLVALLLGVILAWSITRSITAPLHKAVEVASRVAKGQLDNCIEVRGG 242 +++ R +++ LG + ++LG LAW +TRSIT PL++AV +A VA G L + I+ Sbjct: 181 RDYRSGRSMLLALGAIEIVLGAALAWLLTRSITRPLNQAVTIAETVAAGDLTSRIDSSSR 240 Query: 243 DETGQLMLALKDMNEKLVGIVSRVRQGTDTIATASTEIASGNLDLSDRTEQQASSLEETA 302 DETG+L+ ALK MN L+ IV RVR GT+TI TAS EIA+GNLDLS RTE QA SLEETA Sbjct: 241 DETGKLLAALKTMNGNLLDIVGRVRMGTETINTASREIATGNLDLSARTEAQAGSLEETA 300 Query: 303 SAMEELTSTVKQNADNARQANQLANSASEVAVQGGSVVSEVVATMGSINASSRKIVDIIA 362 SAME+LTSTVKQNADNARQAN+LA SAS+VA QGG+VV +VVATMG+I+ASS+KI DII Sbjct: 301 SAMEQLTSTVKQNADNARQANELAASASQVATQGGAVVDQVVATMGAIHASSQKIADIIG 360 Query: 363 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELIGDSVG 422 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSASAAKEIK+LI DSV Sbjct: 361 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDDSVE 420 Query: 423 KVEAGSKLVEQAGATMDEVVASVRRVTDIVAEISSASQEQSDGIEQVNQAINLMDEATQQ 482 KV+ GS+LV +AG TM EVV SV RVT +V EI+ ASQEQSDGIEQVN AI +DE TQQ Sbjct: 421 KVDDGSRLVARAGDTMQEVVQSVARVTAVVREITLASQEQSDGIEQVNLAITHIDETTQQ 480 Query: 483 NAALVEQAAAAARQMQEQAASLSETVSVFRLQ 514 NAALVEQAAAAAR MQ+QAASL++ VSVFRL+ Sbjct: 481 NAALVEQAAAAARSMQDQAASLTDAVSVFRLE 512 >gi|300310594|ref|YP_003774686.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 541 Score = 452 bits (1163), Expect = e-128, Method: Compositional matrix adjust. Identities = 287/514 (55%), Positives = 363/514 (70%), Gaps = 3/514 (0%) Query: 5 NMTIGTRLGLGFATILALMAMITGIGVWRLQEVSKLNDAMVNDALVKERLVNTFYKSIEV 64 NM IG RL LGFA ILA +++ + +WRLQ ++ D M+++ L KERLV+ +Y++I Sbjct: 6 NMKIGRRLALGFAVILAAASVVVALSIWRLQGIAAATDEMMHEPLTKERLVSDWYRTIHT 65 Query: 65 NIGRIVAAAKNPDVEQQKFYKQQIMSVISKNNELVKRMDELFTDEAGRAALNAINERRKS 124 ++ R A AK+ D F+ + + E K ++ L + +A + E RK Sbjct: 66 SVRRTTAIAKSSDPSLAAFFADDAAAASRMSTEQQKAIEALIESDQEKAVFTKLGEVRKD 125 Query: 125 VLEANTEVFKEKDAGNEQAARKVVDEKLLPSTQLYIAAIEKLASMQAERIQILTAQIDDL 184 ++ + K K G + A +++ + + Y+ +++L ++Q I + A I + Sbjct: 126 YIKYRDAISKAKAEGRTEEAAQILAGPFDVAGKGYLDLLQQLLTLQRANIDQVAAHIQTV 185 Query: 185 FQTARKVMIGLGLVALLLGVILAWSITRSITAPLHKAVEVASRVAKGQLDNCIEVR---G 241 ++ +R +M+ L + ++LG + A ++ IT PL +AVEVA VA G L + I+ R Sbjct: 186 YRESRNLMLALAFLQVVLGWLFARTLALGITRPLEQAVEVAEAVAAGDLTHRIDERLAAR 245 Query: 242 GDETGQLMLALKDMNEKLVGIVSRVRQGTDTIATASTEIASGNLDLSDRTEQQASSLEET 301 GDETG+LM AL M L IV +VR GTD IATAS EIA+GNLDLS RTE+QA +LEET Sbjct: 246 GDETGKLMHALHAMTGNLARIVGQVRGGTDAIATASKEIATGNLDLSARTERQAGALEET 305 Query: 302 ASAMEELTSTVKQNADNARQANQLANSASEVAVQGGSVVSEVVATMGSINASSRKIVDII 361 ASAMEELTSTV QNADNARQANQLA SAS VA QGG VVS+V++TMGSIN SSRKIVDII Sbjct: 306 ASAMEELTSTVSQNADNARQANQLAASASSVAQQGGEVVSQVISTMGSINESSRKIVDII 365 Query: 362 AVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELIGDSV 421 +VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSASAAKEIK LI DSV Sbjct: 366 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKALIDDSV 425 Query: 422 GKVEAGSKLVEQAGATMDEVVASVRRVTDIVAEISSASQEQSDGIEQVNQAINLMDEATQ 481 KV +GS+LV +AG+TMDEVVASVR+V DIV+EIS+AS EQSDGI QVN AI MD+ TQ Sbjct: 426 AKVGSGSELVTRAGSTMDEVVASVRQVADIVSEISAASSEQSDGISQVNLAITDMDQTTQ 485 Query: 482 QNAALVEQAAAAARQMQEQAASLSETVSVFRLQG 515 QNAALVE+AAAAA MQEQAA LSE VS F+L G Sbjct: 486 QNAALVEEAAAAAEAMQEQAARLSEVVSQFKLLG 519 >gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 576 Score = 448 bits (1152), Expect = e-127, Method: Compositional matrix adjust. Identities = 291/520 (55%), Positives = 361/520 (69%), Gaps = 14/520 (2%) Query: 1 MQMKNMTIGTRLGLGFATILALMAMITGIGVWRLQEVSKLNDAMVNDALVKERL------ 54 M++ +M I RLG FA ++ +M +I G+GV L VS D +VND VK L Sbjct: 2 MKISDMKISVRLGACFAALIVVMCVIAGVGVKNLLMVSDATDEIVNDRYVKVALGTQITD 61 Query: 55 -VNTFYKSIEVNIGRIVAAAKNPDVEQQKFYKQQIMSVISKNNELVKRMDELFTDEAGRA 113 VNT +S+ R A+NP E+QK Y ++ + S+ +E + M++ G Sbjct: 62 KVNTGARSL-----RNAIMARNP--EEQKKYLDRMDTYTSQVSEHLAEMEKRTNTPRGSE 114 Query: 114 ALNAINERRKSVLEANTEVFKEKDAGNEQAARKVVDEKLLPSTQLYIAAIEKLASMQAER 173 L A+ + R + +V A + +K +P Y AA++++ S Q+ Sbjct: 115 LLAALKQARADYSKERIKVVDLIHQQKRDEATAHLFDKTIPVQDKYFAAVKEMVSFQSSL 174 Query: 174 IQILTAQIDDLFQTARKVMIGLGLVALLLGVILAWSITRSITAPLHKAVEVASRVAKGQL 233 + + +A +M+ L VA+LL + A ITRSIT PL++AV+VA+ VA G L Sbjct: 175 MDKSAERASAASSSAINIMLVLSGVAVLLSALCAMLITRSITRPLNEAVQVATAVAAGDL 234 Query: 234 DNCIEVRGGDETGQLMLALKDMNEKLVGIVSRVRQGTDTIATASTEIASGNLDLSDRTEQ 293 IE DETG L+ ALK MN+ L IV+ VR GTDTI TAS EIA+GNLDLS RTEQ Sbjct: 235 TVQIEATSKDETGALLGALKSMNDNLHRIVAEVRAGTDTINTASREIATGNLDLSSRTEQ 294 Query: 294 QASSLEETASAMEELTSTVKQNADNARQANQLANSASEVAVQGGSVVSEVVATMGSINAS 353 QA +LEETASAMEELTSTV+QNADNARQAN LA +AS+VA+QGGSVV EVV TMG IN + Sbjct: 295 QAGALEETASAMEELTSTVRQNADNARQANTLAETASQVAIQGGSVVGEVVQTMGQINDA 354 Query: 354 SRKIVDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEI 413 SRKIVDII+VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSA+AAKEI Sbjct: 355 SRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEI 414 Query: 414 KELIGDSVGKVEAGSKLVEQAGATMDEVVASVRRVTDIVAEISSASQEQSDGIEQVNQAI 473 K LI SV +VE+GS+LV QAGATM+EVVASV+RVTD+VAEI++AS EQSDGIEQ+NQAI Sbjct: 415 KSLIDASVERVESGSRLVGQAGATMEEVVASVKRVTDVVAEITAASGEQSDGIEQINQAI 474 Query: 474 NLMDEATQQNAALVEQAAAAARQMQEQAASLSETVSVFRL 513 MDE TQQNAALVEQAAAAA+ +QEQ+ LS+TV +FRL Sbjct: 475 VQMDEVTQQNAALVEQAAAAAQSLQEQSGRLSDTVGIFRL 514 >gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 597 Score = 446 bits (1146), Expect = e-126, Method: Compositional matrix adjust. Identities = 285/516 (55%), Positives = 361/516 (69%), Gaps = 6/516 (1%) Query: 1 MQMKNMTIGTRLGLGFATILALMAMITGIGVWRLQEVSKLNDAMVNDALVKERLVNTFYK 60 M++K++ I RL + FA ++ +M +ITG+G+ L +SK + +V D K L Sbjct: 1 MKLKDIKISVRLAVCFAVLIGVMCLITGVGMKSLSSISKSSALIVEDRYEKIALAVEIRD 60 Query: 61 SIEVNIGRIVAAAKNPDVEQQKFYKQQIMSVISKNNELVKRMDELFTDEAGRAALNAINE 120 ++ + A ++E+ Y + + +K E + +M+++ + GR +I E Sbjct: 61 NVNGAARNLRNALLGRNLEEATRYLDRSAANSAKTTEALGKMEKILSTARGRELFQSIQE 120 Query: 121 RRKSVLEANTEVFKEKDAGNEQAARKVVD---EKLLPSTQLYIAAIEKLASMQAERIQIL 177 R + NT K ++ +Q + V+ +++P+ Y +++ + Q ++ Sbjct: 121 ARSAY---NTPRDKLRELIKQQKKEEAVELLFTQVIPAQDKYFQVLDQFVAFQKSLMEQS 177 Query: 178 TAQIDDLFQTARKVMIGLGLVALLLGVILAWSITRSITAPLHKAVEVASRVAKGQLDNCI 237 + D Q+A +M+GL VA+ L VI AW +TRSIT PL++AV VAS VA G L I Sbjct: 178 VTEGRDTTQSAIAMMLGLSAVAIALCVIAAWLVTRSITRPLNEAVSVASAVAAGDLTVQI 237 Query: 238 EVRGGDETGQLMLALKDMNEKLVGIVSRVRQGTDTIATASTEIASGNLDLSDRTEQQASS 297 DETG L+ ALK MN+ L IVS VRQG+DTI TAS EIA+GNLDLS RTE+QA + Sbjct: 238 GATSKDETGALLAALKSMNDSLHRIVSEVRQGSDTINTASAEIATGNLDLSSRTEEQAGA 297 Query: 298 LEETASAMEELTSTVKQNADNARQANQLANSASEVAVQGGSVVSEVVATMGSINASSRKI 357 LEETASAMEELTSTVKQNADNARQAN LA +ASEVAVQGGSVV +VV TMG IN +SRKI Sbjct: 298 LEETASAMEELTSTVKQNADNARQANSLAATASEVAVQGGSVVGQVVQTMGEINDASRKI 357 Query: 358 VDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELI 417 VDII+VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIK LI Sbjct: 358 VDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKALI 417 Query: 418 GDSVGKVEAGSKLVEQAGATMDEVVASVRRVTDIVAEISSASQEQSDGIEQVNQAINLMD 477 DSV +V+ GS+LVEQAG TM EVVASVRRVTD+VAEIS+AS EQSDGIEQ+N AI MD Sbjct: 418 DDSVSRVDNGSRLVEQAGTTMTEVVASVRRVTDVVAEISAASNEQSDGIEQINHAITQMD 477 Query: 478 EATQQNAALVEQAAAAARQMQEQAASLSETVSVFRL 513 + TQQNAALVE+AAAAA+ +QEQ+ LS TVSVF+L Sbjct: 478 QVTQQNAALVEEAAAAAQSLQEQSTRLSATVSVFKL 513 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.313 0.125 0.318 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,021,100 Number of extensions: 33547 Number of successful extensions: 576 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 272 Number of HSP's successfully gapped: 71 Length of query: 515 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 426 Effective length of database: 1,198,455 Effective search space: 510541830 Effective search space used: 510541830 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 133 (55.8 bits)