BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1705.p (239 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310738|ref|YP_003774830.1| transcription regulator protein... 192 2e-50 gi|300311999|ref|YP_003776091.1| GntR family transcription regul... 87 1e-18 gi|300311599|ref|YP_003775691.1| transcription regulator protein... 75 5e-15 gi|300313741|ref|YP_003777833.1| GntR family transcription regul... 73 2e-14 gi|300313534|ref|YP_003777626.1| GntR family transcription regul... 70 2e-13 >gi|300310738|ref|YP_003774830.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 234 Score = 192 bits (489), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 103/216 (47%), Positives = 132/216 (61%) Query: 5 GSLPEYVYAQLRQDIFDMRLLPGDQITETEIAAYFKVSRTPVRQALQRLQNDGLMQGYVR 64 +L E VY +L+ DIF RLLPGD TETE+A VSRTP+R AL RLQ +G ++ R Sbjct: 7 NALAEQVYHRLKDDIFSFRLLPGDNFTETEMAQRQGVSRTPLRDALFRLQREGYLEVGFR 66 Query: 65 GGWEVVPIDFKRFADLYEMRKLIETHAVRRLCTSGSDQSVLADLRATWCLPAEAREPDGP 124 GW+V PIDF R +LY++R ++E A+ +LC+ + L L A W +AR+ D Sbjct: 67 RGWKVCPIDFDRLDNLYDLRIVLEMAALDKLCSQPEASAELTQLNAIWLAEPDARQTDAV 126 Query: 125 KAAQLDEIFHQTLVRAAGNQEMAETFDRLTDRIRIVRRLDFLYGDCLHSTYEEHAAILDC 184 K AQLDE FH LV AAGN+EM +T++IRIVRRLDFL + +TYEEH IL Sbjct: 127 KVAQLDEAFHTNLVAAAGNEEMTRVHTEVTEKIRIVRRLDFLKKKRIDATYEEHGKILQL 186 Query: 185 IAAGDAESAIRLMGEHIDGSHAEVNQITLHRLHSAR 220 IA A A L+ HI S EV +IT+ L AR Sbjct: 187 IAKRKATEAQILLRAHITQSKLEVRKITIWMLAEAR 222 >gi|300311999|ref|YP_003776091.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 222 Score = 87.0 bits (214), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 70/215 (32%), Positives = 109/215 (50%), Gaps = 14/215 (6%) Query: 15 LRQDIFDM----RLLPGDQITETEIAAYFKVSRTPVRQALQRLQNDGLMQGYVRGGWEVV 70 LR+ I ++ +L PG + ET +A F VSRTP+R+AL +L + G+++ R G V Sbjct: 11 LRESIEELIAVSKLSPGQHLDETSLAEEFGVSRTPIREALIQLASMGIVEMRPRRGAIVA 70 Query: 71 PIDFKRFADLYEMRKLIETHAVR---RLCTSGSDQSVLADLRATWCLPAEAREPDGPKAA 127 I ++ +++E+ E R R T +LA +A AR+ + P A Sbjct: 71 EIGPQQLIEMFEVMAEFEAMCGRLAARRMTPAEHAELLAAHQACQA----ARDANDPDAY 126 Query: 128 -QLDEIFHQTLVRAAGNQEMAETFDRLTDRIRIVRRLDFLYGDCLHSTYEEHAAILDCIA 186 L+E FH + + N +A+ L R+R RRL D L S+++EH A++D I Sbjct: 127 FYLNEAFHDHIYAGSHNGFLADQARALHRRLRPYRRLQLRVRDRLKSSFDEHQAVVDAII 186 Query: 187 AGDAESAIRLMGEH--IDGSHAEVNQITLHRLHSA 219 +GDAE + L+ EH I G +LH+L SA Sbjct: 187 SGDAEKTVDLLREHIMIQGQRFADLVASLHQLKSA 221 >gi|300311599|ref|YP_003775691.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 243 Score = 75.1 bits (183), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 63/237 (26%), Positives = 107/237 (45%), Gaps = 21/237 (8%) Query: 6 SLPEYVYAQLRQDIFDMRLLPGDQITETEIAAYFKVSRTPVRQALQRLQNDGLMQGYVRG 65 +L E+V+ +++ I + PG +I+E E+A + +SR P+R+A+ RL+ L+ Sbjct: 16 TLSEHVFRKIQSAIVQGEIAPGSKISEPELARTYGISRGPLREAIHRLEGQNLLVRVPHV 75 Query: 66 GWEVVPIDFKRFADLYEMRKLIETHAVRRLCTSGSDQSVLADLRATWCLPAEAREPD--- 122 G VV + + +L+++R+ +E A RL ++ L +LR + E D Sbjct: 76 GARVVSLTLEGLVELFQIRESLEGMAC-RLAAQRMSRAELDELRRVL----DTHEKDEAF 130 Query: 123 ----GPKAAQLDEIFHQTLVRAAGNQEMAETFDRLTDRIRIVRRLDFLYGDCLH---STY 175 G + D FH +++A+GNQ + + ++ R Y H + Sbjct: 131 QAGRGYYQQEGDYDFHYKIIQASGNQILTRIL--CGELYQLARMYRIQYSATPHRPRQAF 188 Query: 176 EEHAAILDCIAAGDAESAIRLMGEHIDGSHAEVNQITLHRLHSARATATTKPPAYVS 232 EH ILD +A GD E A LM HI S + H++ A+A K S Sbjct: 189 AEHHRILDALADGDGELADLLMRRHIGASRRNIE----HQIAQAQAGGAGKRAGQAS 241 >gi|300313741|ref|YP_003777833.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 222 Score = 73.2 bits (178), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 60/201 (29%), Positives = 92/201 (45%), Gaps = 5/201 (2%) Query: 9 EYVYAQLRQDIFDMRLLPGDQITETEIAAYFKVSRTPVRQALQRLQNDGLMQGYVRGGWE 68 E VY LRQ + + PG Q+ E +A VSRTPVR AL+RL DGL G Sbjct: 6 EKVYEVLRQRLVGGQYKPGTQLKEEPLARELGVSRTPVRTALRRLVEDGLATADAGQGIH 65 Query: 69 VVPIDFKRFADLYEMRKLIETHAVRRLCTSGSDQSVLADLRATWCLPAEAREPDG----P 124 V + +++R L+E +A L D+ +LA LR + A+A + G Sbjct: 66 VAAWSDWDIEETFQLRMLLEPYAA-SLAAERGDEKMLALLRESNEKMAQAIKSGGLHSVE 124 Query: 125 KAAQLDEIFHQTLVRAAGNQEMAETFDRLTDRIRIVRRLDFLYGDCLHSTYEEHAAILDC 184 K + IFH+T++ + + + + + D IVR L + H +L Sbjct: 125 KIQAANSIFHRTILEYSASPRLRAMLETIIDMPIIVRSFHLYEKSELEQSLHHHQDLLLA 184 Query: 185 IAAGDAESAIRLMGEHIDGSH 205 + A DAE A ++M H+ S+ Sbjct: 185 MQARDAELARQVMQLHLRMSY 205 >gi|300313534|ref|YP_003777626.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 249 Score = 70.1 bits (170), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 57/203 (28%), Positives = 95/203 (46%), Gaps = 4/203 (1%) Query: 11 VYAQLRQDIFDMRLLPGDQITETEIAAYFKVSRTPVRQALQRLQNDGLMQGYVRGGWEVV 70 + ++ + I +L PG ++ E ++A FKVSRT VR+AL L G++ R GW V+ Sbjct: 13 IAVRITEAILAKQLAPGTRLGEQQLADLFKVSRTQVREALTHLMARGIVTVSARRGWFVI 72 Query: 71 PIDFKRFADLYEMRKLIETHAVRRLCTSGSDQSVLADLRATWCL--PAEAREPDGPKAAQ 128 + + +E R++IE +R+ + + LR A A G ++ Sbjct: 73 EPTPAQAREAFEARRVIELGLLRQARLRPVGDTAIGQLREHIAREEAAIAGADVGARSYL 132 Query: 129 LDEIFHQTLVRAAGNQEMAETFDRLTDRIRIVRRLDFLYGDCLHSTYEEHAAILDCIAAG 188 L + FH L GN +AET LT R + L + + EH I++ + G Sbjct: 133 LGD-FHVCLAECLGNSLLAETLRDLTARTTLTAML-HQSSEQAEDSCSEHVLIVEALERG 190 Query: 189 DAESAIRLMGEHIDGSHAEVNQI 211 D E A +LM +H+ + +NQ+ Sbjct: 191 DLEQAEQLMHDHLQHVESGLNQV 213 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.136 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 740,133 Number of extensions: 29434 Number of successful extensions: 133 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 127 Number of HSP's successfully gapped: 10 Length of query: 239 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 157 Effective length of database: 1,231,600 Effective search space: 193361200 Effective search space used: 193361200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)