BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1702.p
         (353 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311172|ref|YP_003775264.1| L-aminopeptidase/D-esterase [He...   572   e-164

>gi|300311172|ref|YP_003775264.1| L-aminopeptidase/D-esterase
           [Herbaspirillum seropedicae SmR1]
          Length = 341

 Score =  572 bits (1474), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 293/340 (86%), Positives = 309/340 (90%)

Query: 3   ISVSVPHIGPLQAGLRNSITDVDGVRVGHCTLDAGPVQTGVTVIAPHGGNLFTHRLPAAA 62
           +S+ VPHIG L AG RNSITDV GVRVGHCTLD G VQTGVTVIAPH GNLFTH+LPAA 
Sbjct: 1   MSLPVPHIGRLPAGPRNSITDVAGVRVGHCTLDDGAVQTGVTVIAPHPGNLFTHKLPAAV 60

Query: 63  AVINGFGKSAGLVQLEELGLLETPIALSNTFAVGTLLNAQIAHTVRANPQCGRSLPTVNA 122
           AVINGFGKSAGLVQLEELG LETPIALSNTFAVG LL AQI HT+RANP+CGRSLPTVN 
Sbjct: 61  AVINGFGKSAGLVQLEELGTLETPIALSNTFAVGALLEAQIRHTLRANPECGRSLPTVNP 120

Query: 123 LVLECNDGYLNDLQAMAVQAAHFEAAMQALSPEVAQGSVGAGRGMSSFGLKGGIGTASRL 182
           LVLECNDGYLNDLQ MAVQAAHFEAA+QALS EV QG+VGAGRGMSSF LKGGIGTASR 
Sbjct: 121 LVLECNDGYLNDLQRMAVQAAHFEAALQALSEEVVQGAVGAGRGMSSFELKGGIGTASRC 180

Query: 183 AVVGQAAQVFTVGALVLSNFGRLPELILAGDPLGARLAAAEHCDSAPEKGSIIMILATDA 242
            V+G+AAQ FTVGALVLSNFGRLPELILAG+PLGA+LA     DSAPEKGSIIMILATDA
Sbjct: 181 VVLGKAAQGFTVGALVLSNFGRLPELILAGEPLGAQLAGQGGSDSAPEKGSIIMILATDA 240

Query: 243 PLDARQLKRLATRAGAGLARTGSVYGHGSGDIALAFSTAQQIEVEAECVQMALLADQVLD 302
           PLDARQLKRLATRAGAGLARTGS YGHGSGDIALAFSTAQQIE EA+CVQMALLAD +LD
Sbjct: 241 PLDARQLKRLATRAGAGLARTGSAYGHGSGDIALAFSTAQQIESEADCVQMALLADHLLD 300

Query: 303 PLFHAAADSVEQAIIHALLTAETVRGRDGHVRVGLRERLA 342
           PLFHAAADSVEQAI+HALL A+TVRGRDGHVR+ LRERLA
Sbjct: 301 PLFHAAADSVEQAIVHALLAAQTVRGRDGHVRMSLRERLA 340


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,074,049
Number of extensions: 44138
Number of successful extensions: 185
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 185
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 267
Effective length of database: 1,212,660
Effective search space: 323780220
Effective search space used: 323780220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)