BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1682.p (917 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311157|ref|YP_003775249.1| multidrug ABC transporter ATPas... 1592 0.0 gi|300311269|ref|YP_003775361.1| multidrug ABC transporter ATPas... 1151 0.0 gi|300310396|ref|YP_003774488.1| sugar ABC transporter ATPase [H... 129 8e-31 gi|300310367|ref|YP_003774459.1| sugar ABC transporter ATPase [H... 122 1e-28 gi|300313777|ref|YP_003777869.1| D-xylose ABC transporter ATPase... 117 3e-27 >gi|300311157|ref|YP_003775249.1| multidrug ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 923 Score = 1592 bits (4122), Expect = 0.0, Method: Compositional matrix adjust. Identities = 812/925 (87%), Positives = 844/925 (91%), Gaps = 10/925 (1%) Query: 1 MTPAPGEHGHGVARLTGVSLHYGQRCALENVSLDIPAGRMVGLIGPDGVGKSSLLSLVAG 60 M PG G VARL V+L YG+ AL+ VSLDIPAG MVGLIGPDGVGKSSLLSLVAG Sbjct: 1 MNTLPG--GACVARLQRVALRYGKTVALDAVSLDIPAGCMVGLIGPDGVGKSSLLSLVAG 58 Query: 61 ARALQAGEVSVLGGDMRQAEHRQQVCPRIAYMPQGLGKNLYPTLSVEENLQFFARLFGQG 120 ARALQ GE++VLGGDMRQ HRQQ CPRIAYMPQGLGKNLYPTLSVEENLQFF RLFGQ Sbjct: 59 ARALQQGELAVLGGDMRQQRHRQQACPRIAYMPQGLGKNLYPTLSVEENLQFFGRLFGQD 118 Query: 121 AAERRRRIDELTAGTGLSAFLARPAGKLSGGMKQKLGLCCSLIHDPDLLILDEPTTGVDP 180 A+ERRRRIDELT TGL FLARPAGKLSGGMKQKLGLCCSLIHDPDLLILDEPTTGVDP Sbjct: 119 ASERRRRIDELTTSTGLDKFLARPAGKLSGGMKQKLGLCCSLIHDPDLLILDEPTTGVDP 178 Query: 181 LSRAQFWDLIARIRAQRPGMSVIVATAYMEEADRFDWLVAMDAGKVLATGTPAELHARTG 240 LSRAQFWDLIA IR QR GMSVIVATAYMEEADRFDWLVAMD G+VLATGTP +LH RTG Sbjct: 179 LSRAQFWDLIAHIRQQRAGMSVIVATAYMEEADRFDWLVAMDEGRVLATGTPVQLHQRTG 238 Query: 241 TASLEEAFIALLPEEKRRGHQAVQVTPLDDSNAAEVAIEAKGLTMRFGDFVAVDHVDFRI 300 TASLEEAFIALLPEEKRRGHQ VQVTPLDD+ + VAIEAKGLTMRFGDF+AVDHVDFRI Sbjct: 239 TASLEEAFIALLPEEKRRGHQTVQVTPLDDTIDSGVAIEAKGLTMRFGDFLAVDHVDFRI 298 Query: 301 RRGEIFGFLGSNGCGKSTTMKMLTGLLQASQGQAWLFGREVDPRDMTTRARVGYMSQAFS 360 RRGEIFGFLGSNGCGKSTTMKMLTGLL AS+GQAWLFGRE+DPRDM TRARVGYMSQAFS Sbjct: 299 RRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGQAWLFGREIDPRDMATRARVGYMSQAFS 358 Query: 361 LYGELSVRQNLVLHARLYRLPEDQIAARTEEMATRFGLLDVMDSLPESLPLGIRQRLSLA 420 LYGELSVRQNLVLHARLYR+P +QIAART+EMA RFGLLDVMDSLPESLPLGIRQRLSLA Sbjct: 359 LYGELSVRQNLVLHARLYRVPAEQIAARTDEMARRFGLLDVMDSLPESLPLGIRQRLSLA 418 Query: 421 VAMVHKPELLILDEPTSGVDPIARDLFWQLMIDLARRDKVTIFISTHFMNEAQRCDRISL 480 VAMVHKPELLILDEPTSGVDPIARDLFWQLMI LAR+D+VTIFISTHFMNEA RCDRISL Sbjct: 419 VAMVHKPELLILDEPTSGVDPIARDLFWQLMIGLARQDQVTIFISTHFMNEALRCDRISL 478 Query: 481 MHAGRVLVSATPEELVRQRGAASLEQAFIGYLEE--------AAGKGDPVPSPAQNVISA 532 MHAGRVLVSATP+ L++QRGA +LEQAFIGYLEE AA + A S Sbjct: 479 MHAGRVLVSATPQALMQQRGAQTLEQAFIGYLEEAAGKGGSAAATHSAVAVAVAPPAASP 538 Query: 533 PQTAKPRPGRLRTSLGRALSYSQRESLELRRDPVRATLALLGTAILMFIIGYGINLDVEN 592 + PR R RTSLGRALSYSQRESLELRRDPVRATLALLGTAILMFIIGYGINLDVEN Sbjct: 539 AASPAPRLSRWRTSLGRALSYSQRESLELRRDPVRATLALLGTAILMFIIGYGINLDVEN 598 Query: 593 LSYAVLDRDQTGLSQNYALNLSGSRYFIEKPPITDYQDLDRRMRSGDISLAIEIPPGFAR 652 LSYAVLDRDQTGLSQNYALNLSGSRYFIEKPPI+DYQ+LDRRMRSGDISLAIEIPPGFAR Sbjct: 599 LSYAVLDRDQTGLSQNYALNLSGSRYFIEKPPISDYQELDRRMRSGDISLAIEIPPGFAR 658 Query: 653 DIARGKPVEVGAWVDGAMPTRAETVRGYVQGMHLLWLADMATHRLGQSMGQAATIETRYR 712 DIARG VEVGAWVDGAMPTRAETVRGYVQGMH LWLADMATHRLGQS+ A IETRYR Sbjct: 659 DIARGHTVEVGAWVDGAMPTRAETVRGYVQGMHQLWLADMATHRLGQSLAMPARIETRYR 718 Query: 713 YNPDVKSLPAMVPAIIPLLLMMIPAMLTALSVVREKELGSILNLYVTPVTRTEFLLGKQL 772 YNPDVKSLPAMVPAIIPLLLMMIPAMLTALSVVREKELGSILNLYVTPV+RTEFLLGKQL Sbjct: 719 YNPDVKSLPAMVPAIIPLLLMMIPAMLTALSVVREKELGSILNLYVTPVSRTEFLLGKQL 778 Query: 773 PYLLLGMLNFAMLTVLAVTVFGVPVKGSLLTLTLAALIFIICSTGFGLLASTFTNSQIAA 832 PYLLLGMLNFAMLT+LAVTVFGVPVKGSLLTLTLAAL+F+ICSTGFGLLASTFTNSQIAA Sbjct: 779 PYLLLGMLNFAMLTLLAVTVFGVPVKGSLLTLTLAALVFVICSTGFGLLASTFTNSQIAA 838 Query: 833 LFVTMIGTIIPCVQFAGLLNPVSSLEGMGALIGQVYPATHFLTISRGVFSKALDASDLAS 892 LFVTMIGTIIPCVQFAGLLNPVSSLEGMGALIGQVYPATHFLTISRGVFSKAL DLAS Sbjct: 839 LFVTMIGTIIPCVQFAGLLNPVSSLEGMGALIGQVYPATHFLTISRGVFSKALALDDLAS 898 Query: 893 SFWPLTLAAPVILGLSVLLLKKQER 917 SFWPL +AAPVILGLSVLLLKKQER Sbjct: 899 SFWPLVVAAPVILGLSVLLLKKQER 923 >gi|300311269|ref|YP_003775361.1| multidrug ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 913 Score = 1151 bits (2978), Expect = 0.0, Method: Compositional matrix adjust. Identities = 582/906 (64%), Positives = 711/906 (78%), Gaps = 3/906 (0%) Query: 13 ARLTGVSLHYGQRCALENVSLDIPAGRMVGLIGPDGVGKSSLLSLVAGARALQAGEVSVL 72 AR+ VS YG+ AL +V LDIP G M GLIGPDGVGKS+LLSL+AGAR ++AG + VL Sbjct: 8 ARVHDVSHSYGKNPALSHVELDIPGGCMAGLIGPDGVGKSTLLSLIAGARRIRAGRIDVL 67 Query: 73 GGDMRQAEHRQQVCPRIAYMPQGLGKNLYPTLSVEENLQFFARLFGQGAAERRRRIDELT 132 GGD+ QA HR V P IAYMPQGLGKNLYPTLSVEENLQF ARLFGQ A ERR+RID+LT Sbjct: 68 GGDIGQAAHRDAVGPCIAYMPQGLGKNLYPTLSVEENLQFIARLFGQDAQERRQRIDDLT 127 Query: 133 AGTGLSAFLARPAGKLSGGMKQKLGLCCSLIHDPDLLILDEPTTGVDPLSRAQFWDLIAR 192 TGL FLARPAG+LSGGMKQKL LCC+LIHDPDLLILDEPTTGVDPL+RAQFW+LIAR Sbjct: 128 HSTGLQPFLARPAGQLSGGMKQKLSLCCALIHDPDLLILDEPTTGVDPLARAQFWELIAR 187 Query: 193 IRAQRPGMSVIVATAYMEEADRFDWLVAMDAGKVLATGTPAELHARTGTASLEEAFIALL 252 +R + PGMSVIVATAYM+EA FDWL MD G+VLATGTPA L ARTG +SLE AFIALL Sbjct: 188 LRQRHPGMSVIVATAYMDEAQAFDWLAVMDQGQVLATGTPAALLARTGASSLERAFIALL 247 Query: 253 PEEKRRGHQAVQVTPLDDSNAAEVAIEAKGLTMRFGD-FVAVDHVDFRIRRGEIFGFLGS 311 P ++ GH+A+ + PL+ ++A ++AIEA+ L+MRF D F AVDHV FRIRRGEIFGFLGS Sbjct: 248 PAHRKAGHEALSIPPLE-THADDIAIEAENLSMRFADGFTAVDHVSFRIRRGEIFGFLGS 306 Query: 312 NGCGKSTTMKMLTGLLQASQGQAWLFGREVDPRDMTTRARVGYMSQAFSLYGELSVRQNL 371 NGCGK+TTMKMLTGLL AS G+A LFG+E+DPRD+ R RVGYMSQ+FSLY +LSVRQNL Sbjct: 307 NGCGKTTTMKMLTGLLPASSGRARLFGQEIDPRDVCLRKRVGYMSQSFSLYKDLSVRQNL 366 Query: 372 VLHARLYRLPEDQIAARTEEMATRFGLLDVMDSLPESLPLGIRQRLSLAVAMVHKPELLI 431 LHARL+ LP QI R EMA RF L+ VMDSL LP+GIRQRLSLAVA +H PE+LI Sbjct: 367 ALHARLFHLPAAQIGPRVAEMARRFALMPVMDSLAADLPMGIRQRLSLAVATIHGPEILI 426 Query: 432 LDEPTSGVDPIARDLFWQLMIDLARRDKVTIFISTHFMNEAQRCDRISLMHAGRVLVSAT 491 LDEPTSGVDP+ARD FWQL++ L+RRDKVTIF+STHFMNEA RCDR+S+MHAG+VL S T Sbjct: 427 LDEPTSGVDPVARDHFWQLLVTLSRRDKVTIFLSTHFMNEALRCDRMSMMHAGKVLDSDT 486 Query: 492 PEELVRQRGAASLEQAFIGYLEEAAGKGDPVPSPAQNVISAPQTAKPRPGRLRT-SLGRA 550 P L+ +RGAA+LEQAFIGYL +A P ++ + P P + S R Sbjct: 487 PAALMHKRGAATLEQAFIGYLVQAGQDEKHAPGQSRQTAAMPPGLPSHPAPPTSFSWQRM 546 Query: 551 LSYSQRESLELRRDPVRATLALLGTAILMFIIGYGINLDVENLSYAVLDRDQTGLSQNYA 610 LSY+ RE+LELRRDPVRAT+ALLG+ +LMF+IGYGI+ DV L YAVLD+DQ+ S++YA Sbjct: 547 LSYAWREALELRRDPVRATMALLGSLLLMFVIGYGISTDVNGLPYAVLDQDQSSASRDYA 606 Query: 611 LNLSGSRYFIEKPPITDYQDLDRRMRSGDISLAIEIPPGFARDIARGKPVEVGAWVDGAM 670 L S YF E+ P+ LD+RMR+G+++LAIEIP GF R +A G+ VE+GAW++GAM Sbjct: 607 AALRASPYFQERAPLQGPAQLDKRMRNGELTLAIEIPSGFGRRLAAGRQVEIGAWINGAM 666 Query: 671 PTRAETVRGYVQGMHLLWLADMATHRLGQSMGQAATIETRYRYNPDVKSLPAMVPAIIPL 730 P+RAETV+ YVQGMH WL G+ A I+TR RYN D++SLPA++PA+IPL Sbjct: 667 PSRAETVQAYVQGMHQHWLEQRQQRLQGRPQTPALEIQTRLRYNADLRSLPAILPAVIPL 726 Query: 731 LLMMIPAMLTALSVVREKELGSILNLYVTPVTRTEFLLGKQLPYLLLGMLNFAMLTVLAV 790 LL+ +PAMLTAL+VVREKELG+I+N YVTPVTR EFL GKQLPY+ LGM NF ++++ AV Sbjct: 727 LLLTLPAMLTALAVVREKELGAIINFYVTPVTRLEFLCGKQLPYIALGMFNFLLMSMAAV 786 Query: 791 TVFGVPVKGSLLTLTLAALIFIICSTGFGLLASTFTNSQIAALFVTMIGTIIPCVQFAGL 850 T+ +PVKGS L LA L++++ +TG GL+AS T SQIAA+F ++GT++P QFAG+ Sbjct: 787 TLLELPVKGSYAALALATLVYLVIATGMGLVASALTRSQIAAMFAALLGTLVPATQFAGM 846 Query: 851 LNPVSSLEGMGALIGQVYPATHFLTISRGVFSKALDASDLASSFWPLTLAAPVILGLSVL 910 PVS+LEGMG L+G ++PATH ISRGV+ KAL +D+A+S L PV++GL+VL Sbjct: 847 TTPVSALEGMGRLVGDIHPATHMFLISRGVYVKALGLADVATSLALLLATLPVVMGLAVL 906 Query: 911 LLKKQE 916 +L+KQE Sbjct: 907 MLRKQE 912 >gi|300310396|ref|YP_003774488.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 506 Score = 129 bits (325), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 134/500 (26%), Positives = 226/500 (45%), Gaps = 40/500 (8%) Query: 14 RLTGVSLHYGQRCALENVSLDIPAGRMVGLIGPDGVGKSSLLSLVAGARALQAGEVSVLG 73 +LTG+ ++G L V L++ AG + L+G +G GKS+L+ ++ G AGE+ + G Sbjct: 7 QLTGIKKNFGPVTVLRGVDLEVRAGEVHALLGENGAGKSTLMKILCGIVRPDAGEIRIDG 66 Query: 74 GDMRQAEHRQQVCPRIAYMPQGLGKNLYPTLSVEENLQFFARLFGQ--GAAER---RRRI 128 R +R + + + Q +L P L +N+ F AR G +R RRR Sbjct: 67 QPCRFDSYRAAIAGGVGVVFQEF--SLIPYLDAVDNM-FLARELRSRWGWLQRAAMRRRA 123 Query: 129 DELTAGTGLSAFLARPAGKLSGGMKQKLGLCCSLIHDPDLLILDEPTTGVDPLSRAQFWD 188 E+ G++ L P KLS +Q + + +L D +L+LDEPT + P + Sbjct: 124 QEIIGQLGVAIPLDVPVCKLSVAQQQFVEIAKALALDARILVLDEPTATLTPAEVEHLFA 183 Query: 189 LIARIRAQRPGMSVIVATAYMEEA-DRFDWLVAMDAGKVLATGTPAELHARTGTASLEEA 247 ++ +RAQ G+++I + ++EE + D + + G +AT AE+ A L E Sbjct: 184 VMRSLRAQ--GVAIIFISHHLEEIFEICDRITVLRDGAYVATCATAEVD----QARLVEM 237 Query: 248 FIALLPEEKRRGHQAVQVTPLDDSNA-AEVAIEAKGLTMRFGDFVAVDHVDFRIRRGEIF 306 + RR P EV +E L +R V+ F++RRGEI Sbjct: 238 MVG------RRIENCFPPKPAKGGEGEGEVVLEVHALQLRRQAPVS----QFQLRRGEIL 287 Query: 307 GFLGSNGCGKSTTMKMLTGLLQASQGQAWLFG---REVDPRDMTTRARVGYMSQAFSLYG 363 GF G G G++ T+ + G A + + G R DP +A +G + ++ G Sbjct: 288 GFAGLVGSGRTETVLAMLGAHAALSCKLSMHGVPLRFADPAQ-ALQAGIGLLPESRKEQG 346 Query: 364 ---ELSVRQNLVLHAR-LYRLPEDQIAARTEEMATRFGLLDVMDSLP------ESLPLGI 413 S+ N+ L+ YRL + R E+ AT + V P ++L G Sbjct: 347 LITSFSILHNVSLNNYGKYRLGGLFLDRRREQQATEAAMQRVRVKAPGAQVRVDTLSGGN 406 Query: 414 RQRLSLAVAMVHKPELLILDEPTSGVDPIARDLFWQLMIDLARRDKVTIFISTHFMNEAQ 473 +Q++ +A + H ++LI DEPT G+D A+ +QLM + + + IS+ Sbjct: 407 QQKVVIARWINHAMKVLIFDEPTRGIDVGAKSEIYQLMREFTAQGYSILMISSELPEVVG 466 Query: 474 RCDRISLMHAGRVLVSATPE 493 DR+ + G ++ + E Sbjct: 467 MADRVCVFRGGGIVATLEGE 486 Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 63/228 (27%), Positives = 106/228 (46%), Gaps = 6/228 (2%) Query: 278 IEAKGLTMRFGDFVAVDHVDFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLQASQGQAWLF 337 ++ G+ FG + VD +R GE+ LG NG GKST MK+L G+++ G+ + Sbjct: 6 LQLTGIKKNFGPVTVLRGVDLEVRAGEVHALLGENGAGKSTLMKILCGIVRPDAGEIRID 65 Query: 338 GR--EVDPRDMTTRARVGYMSQAFSLYGELSVRQNLV----LHARLYRLPEDQIAARTEE 391 G+ D VG + Q FSL L N+ L +R L + R +E Sbjct: 66 GQPCRFDSYRAAIAGGVGVVFQEFSLIPYLDAVDNMFLARELRSRWGWLQRAAMRRRAQE 125 Query: 392 MATRFGLLDVMDSLPESLPLGIRQRLSLAVAMVHKPELLILDEPTSGVDPIARDLFWQLM 451 + + G+ +D L + +Q + +A A+ +L+LDEPT+ + P + + +M Sbjct: 126 IIGQLGVAIPLDVPVCKLSVAQQQFVEIAKALALDARILVLDEPTATLTPAEVEHLFAVM 185 Query: 452 IDLARRDKVTIFISTHFMNEAQRCDRISLMHAGRVLVSATPEELVRQR 499 L + IFIS H + CDRI+++ G + + E+ + R Sbjct: 186 RSLRAQGVAIIFISHHLEEIFEICDRITVLRDGAYVATCATAEVDQAR 233 >gi|300310367|ref|YP_003774459.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 516 Score = 122 bits (307), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 147/522 (28%), Positives = 243/522 (46%), Gaps = 67/522 (12%) Query: 1 MTPAPGEHGHGVARLTGVSLHYGQRCALENVSLDIPAGRMVGLIGPDGVGKSSLLSLVAG 60 MT + G + L+G+ + AL +V L + G + L+G +G GKS+L+ ++ G Sbjct: 1 MTMSVGTQARPMLELSGIHKAFAGVKALTDVGLRLFPGEVHTLMGQNGAGKSTLIKVLTG 60 Query: 61 ARALQAGEVSVLGGDMRQAEHRQQVCPRIAYMPQGLGKNLYPTLSVEENLQFFARL---F 117 G++ + G + A + I+ + Q + NL P LSV EN+ F R F Sbjct: 61 VHEPDGGKIELDGRAIAPASTLEAQALGISTVYQEV--NLCPNLSVAENI-FVGRYPTRF 117 Query: 118 GQGAAERRRRIDELTAGT---------GLSAFLARPAGKLSGGMKQKLGLCCSLIHDPDL 168 G RID + T + +A P ++Q + + +L + Sbjct: 118 G--------RIDWKSVHTQSRQLLQQLQIDIDVAAPLSSYPLAIQQMVAISRALSVSAKV 169 Query: 169 LILDEPTTGVDPLSRAQFWDLIARIRAQRPGMSVIVATAYMEEADRF-DWLVAMDAGKVL 227 LILDEPT+ +D Q + ++ R+R Q GM+++ T ++++ D + + G Sbjct: 170 LILDEPTSSLDEAEVQQLFKVLRRLREQ--GMAILFVTHFLDQTYEISDRITVLRNGVRE 227 Query: 228 ATGTPAELHARTGTASLEEAFIALLPEEKRRGHQAVQVTPLDDSNAA-EVAIEAKGLTMR 286 +EL +R + A+ + G +A+ D+ AA V ++A+G Sbjct: 228 GEYLVSEL-SRLDLVNKMVGVTAVDHRKVEAGAEALASELSTDAAAAGAVFLQAEG---- 282 Query: 287 FGDFVAVDHVDFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLQASQGQAWLFGREVD---P 343 FG + D ++RRGE+FG G G G++ ++L G +A GQ + G+EV P Sbjct: 283 FGRRGVLAPQDLQLRRGEVFGLCGLLGSGRTEMARLLFGADRADCGQLRIEGKEVRLNVP 342 Query: 344 RDMTTRARVGYMSQAFSLYG---ELSVRQNLVL--HAR--LYR-LP---EDQIAA----- 387 RD A +G+ S+ G ELSVR+N++L AR L+R LP ++QIAA Sbjct: 343 RDAIA-AGIGFCSEDRKKEGAILELSVRENIILALQARQGLFRVLPRKRQNQIAADYVKW 401 Query: 388 ---RTEEMATRFGLLDVMDSLPESLPLGIRQRLSLAVAMVHKPELLILDEPTSGVDPIAR 444 +T ++ T GLL G +Q+ LA + P +LILDEPT G+D A+ Sbjct: 402 LGIKTADLETPIGLLSG----------GNQQKALLARWLATDPGMLILDEPTRGIDVRAK 451 Query: 445 DLFWQLMIDLARRDKVTIFISTHFMNEAQRC-DRISLMHAGR 485 +I + R+ +FIS+ + E RC DR+ ++ R Sbjct: 452 QEIMDFVIAMCRKGMSILFISSE-IPEVLRCSDRMLVLRDRR 492 >gi|300313777|ref|YP_003777869.1| D-xylose ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 518 Score = 117 bits (294), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 131/496 (26%), Positives = 216/496 (43%), Gaps = 42/496 (8%) Query: 15 LTGVSLHYGQRCALENVSLDIPAGRMVGLIGPDGVGKSSLLSLVAGA--RALQAGEVSVL 72 + G+ +G AL + + I G VGL G +G GKS+L+ +++G GE+ Sbjct: 8 MKGIVKSFGGVRALNGIDIKIRPGECVGLCGENGAGKSTLMKILSGVYPHGTWEGEILWD 67 Query: 73 GGDMRQAEHRQQVCPRIAYMPQGLGKNLYPTLSVEENLQFFARLFGQGAAERR----RRI 128 G ++ R I + Q L L P LSV EN+ + G RR Sbjct: 68 GKPLQAHSVRDTEAAGIVIIHQEL--MLVPELSVAENIFMGHEITLPGGRMNYPAMYRRA 125 Query: 129 DELTAGTGLSAF-LARPAGKLSGGMKQKLGLCCSLIHDPDLLILDEPTTGVDPLSRAQFW 187 +EL + +A P + GG +Q + + +L D LLILDEP++ + Sbjct: 126 EELMRELNMPDINVALPVSQYGGGHQQLVEIAKALNKDARLLILDEPSSSLTASEIGVLL 185 Query: 188 DLIARIRAQRPGMSVIVATAYMEE-ADRFDWLVAMDAGKVLATGTPAELHA-RTGTASLE 245 +I ++A+ G++ + + ++E A+ D + + GK +AT E+ + T + Sbjct: 186 KIIKDLKAR--GVACVYISHKLDEVAEVCDTISVIRDGKHIATTPMQEMDVDKIITQMVG 243 Query: 246 EAFIALLPEEKRRGHQAVQVTPLDDSNAAEVAIEAKGLTMRFGDF---VAVDHVDFRIRR 302 A+ PE R H EV +EA+ +T D VD V F +RR Sbjct: 244 REITAMYPE---RNHAI-----------GEVVLEARNITCYDIDNPRRKRVDDVSFSVRR 289 Query: 303 GEIFGFLGSNGCGKSTTMKMLTGLLQAS-QGQAWLFGREVDPRDMTTRARVGYM-----S 356 GEI G G G G++ + + G + +GQ L G+ D R G Sbjct: 290 GEILGIAGLVGAGRTELVSAIFGAYRGRYEGQVLLEGKPADTSSPLKSIRRGLCMVPEDR 349 Query: 357 QAFSLYGELSVRQNLVLHA--RLYRLPEDQIAARTEEMATRFGLLDVMDSLP----ESLP 410 + + +L V QN+ L R R +A + + G + V + P SL Sbjct: 350 KHHGIVPDLDVGQNITLTVLNRFSRGSRIDGSAELKTIQDEIGRMRVKTATPFLPITSLS 409 Query: 411 LGIRQRLSLAVAMVHKPELLILDEPTSGVDPIARDLFWQLMIDLARRDKVTIFISTHFMN 470 G +Q+ LA ++ +P++LILDEPT GVD A+ ++L+ +LA+ I +S+ Sbjct: 410 GGNQQKAVLAKMLLAQPKVLILDEPTRGVDVGAKAEIYRLISELAKAGLAIIMVSSELAE 469 Query: 471 EAQRCDRISLMHAGRV 486 DR+ ++ GR+ Sbjct: 470 VLGVSDRVLVIGEGRL 485 Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 114/231 (49%), Gaps = 9/231 (3%) Query: 274 AEVAIEAKGLTMRFGDFVAVDHVDFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLQAS--Q 331 +E +E KG+ FG A++ +D +IR GE G G NG GKST MK+L+G+ + Sbjct: 2 SEYLLEMKGIVKSFGGVRALNGIDIKIRPGECVGLCGENGAGKSTLMKILSGVYPHGTWE 61 Query: 332 GQAWLFGREVDPRDM--TTRARVGYMSQAFSLYGELSVRQNLVLHARLY----RLPEDQI 385 G+ G+ + + T A + + Q L ELSV +N+ + + R+ + Sbjct: 62 GEILWDGKPLQAHSVRDTEAAGIVIIHQELMLVPELSVAENIFMGHEITLPGGRMNYPAM 121 Query: 386 AARTEEMATRFGLLDVMDSLPESLPLGIRQRL-SLAVAMVHKPELLILDEPTSGVDPIAR 444 R EE+ + D+ +LP S G Q+L +A A+ LLILDEP+S + Sbjct: 122 YRRAEELMRELNMPDINVALPVSQYGGGHQQLVEIAKALNKDARLLILDEPSSSLTASEI 181 Query: 445 DLFWQLMIDLARRDKVTIFISTHFMNEAQRCDRISLMHAGRVLVSATPEEL 495 + +++ DL R ++IS A+ CD IS++ G+ + + +E+ Sbjct: 182 GVLLKIIKDLKARGVACVYISHKLDEVAEVCDTISVIRDGKHIATTPMQEM 232 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.138 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,818,759 Number of extensions: 123648 Number of successful extensions: 1149 Number of sequences better than 1.0e-08: 134 Number of HSP's gapped: 754 Number of HSP's successfully gapped: 253 Length of query: 917 Length of database: 1,619,870 Length adjustment: 94 Effective length of query: 823 Effective length of database: 1,174,780 Effective search space: 966843940 Effective search space used: 966843940 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 135 (56.6 bits)