BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1681.p
         (358 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311156|ref|YP_003775248.1| type I antifreeze protein:HlyD ...   576   e-166
gi|300311270|ref|YP_003775362.1| HlyD family membrane-fusion pro...   298   4e-82

>gi|300311156|ref|YP_003775248.1| type I antifreeze protein:HlyD
           family secretion protein [Herbaspirillum seropedicae
           SmR1]
          Length = 360

 Score =  576 bits (1485), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 299/332 (90%), Positives = 314/332 (94%)

Query: 27  WQRLHHGGPGEGFASGNGRIEATEVDVATKLGGRVDAILVNEGDFVSVGQPLAHMQVLSL 86
           WQRLHH GPGEGF SGNGRIEATEVDVATKLGGRVDAILVNEGDFVS GQPLA MQVLSL
Sbjct: 29  WQRLHHNGPGEGFTSGNGRIEATEVDVATKLGGRVDAILVNEGDFVSAGQPLARMQVLSL 88

Query: 87  QAQRDEAQARQQQALSAVASAEAQVAVRESDYQAALAQTAQRESELDAARRRLARSEVLV 146
           QAQRDEA A QQQ+LSAVASAEAQVAVR+SDYQAALAQT QRESELDAARRRLARSEVLV
Sbjct: 89  QAQRDEALAHQQQSLSAVASAEAQVAVRQSDYQAALAQTVQRESELDAARRRLARSEVLV 148

Query: 147 KEGASSLQEVDDDRARVQGMAAAVTAAKAQVTAAQAAVAAARTQVSGAKSTVTAAVATVQ 206
           +EGASS+QEVDDDRARV+ M AAVTA+KAQVTAA+AAV AARTQVSGA+STVTAA ATVQ
Sbjct: 149 REGASSVQEVDDDRARVRSMEAAVTASKAQVTAAEAAVVAARTQVSGARSTVTAAQATVQ 208

Query: 207 RIKVDIDDSTLTAPRAGRVQYRIAQPGEVLGAGGKLLNLVDLSDVYMTFFVPEAVAGKLA 266
           RIKVDIDDSTL APRAGRVQYRIAQPGEVLG GGK+LNLVDLSDVYMTFF+PE V GKLA
Sbjct: 209 RIKVDIDDSTLAAPRAGRVQYRIAQPGEVLGGGGKVLNLVDLSDVYMTFFLPEVVVGKLA 268

Query: 267 LGSDARIVLDAAPQYVIPARISFVASTAQFTPKTVETASERQKLMFRVKAQIDPALLQQH 326
           LGS+ARI+LDAAPQYVIPARISFVASTAQFTPKTVETASERQKLMFRVKAQIDPALLQQH
Sbjct: 269 LGSEARIILDAAPQYVIPARISFVASTAQFTPKTVETASERQKLMFRVKAQIDPALLQQH 328

Query: 327 LTLVKTGLPGVAWVRTDKTRAWPEQLAVKVPQ 358
           LTLVKTGLPGVAWVRTD+ + WP QLAV+VPQ
Sbjct: 329 LTLVKTGLPGVAWVRTDQNQPWPAQLAVQVPQ 360


>gi|300311270|ref|YP_003775362.1| HlyD family membrane-fusion
           protein [Herbaspirillum seropedicae SmR1]
          Length = 358

 Score =  298 bits (764), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 168/351 (47%), Positives = 233/351 (66%), Gaps = 3/351 (0%)

Query: 2   TLEHAKKPLLAAALAVILAGGAYFAWQRLHHGGPGEGFASGNGRIEATEVDVATKLGGRV 61
           +L+H   PL A  L V+LA   +  W          G  S NGR+EATEVD+ ++LGGR+
Sbjct: 4   SLQH---PLFAGLLLVVLAAVGWTGWAWWRDADAPAGLVSSNGRLEATEVDIGSRLGGRI 60

Query: 62  DAILVNEGDFVSVGQPLAHMQVLSLQAQRDEAQARQQQALSAVASAEAQVAVRESDYQAA 121
             +LV+EG+ V  GQ LA++QV SL AQ  EA+A+QQ+A   V  A+AQ+A+R S+ + A
Sbjct: 61  RHMLVDEGEAVQAGQVLAYLQVDSLHAQLREARAQQQRASQGVTVAQAQLAMRRSEQRIA 120

Query: 122 LAQTAQRESELDAARRRLARSEVLVKEGASSLQEVDDDRARVQGMAAAVTAAKAQVTAAQ 181
            A T QR   L AA RR+ RS+ L +  A + QEVDD+   +    A + AA+AQ   A+
Sbjct: 121 QALTVQRHKSLSAATRRVERSQPLGRMQALTAQEVDDEENTLAEARAQLDAAQAQEEGAR 180

Query: 182 AAVAAARTQVSGAKSTVTAAVATVQRIKVDIDDSTLTAPRAGRVQYRIAQPGEVLGAGGK 241
           AA+ AA   V+ A++ + AA A   RI+ D+++S + APR G +QYR+AQ GEV+  G K
Sbjct: 181 AAIRAAEADVASARALLEAAQAATARIEADLEESAIRAPRDGHIQYRLAQAGEVVSEGSK 240

Query: 242 LLNLVDLSDVYMTFFVPEAVAGKLALGSDARIVLDAAPQYVIPARISFVASTAQFTPKTV 301
           LLNL+DLSD++M FF+P  +AGK+ LG + R+VLDAAP   +PARI++V+  AQFTPK V
Sbjct: 241 LLNLIDLSDLHMHFFLPAELAGKVRLGQEVRVVLDAAPTDALPARITYVSRQAQFTPKAV 300

Query: 302 ETASERQKLMFRVKAQIDPALLQQHLTLVKTGLPGVAWVRTDKTRAWPEQL 352
           ETA+ERQKLMFRVKAQ+ P+        +K G+PGVAW++T +   WP+ L
Sbjct: 301 ETANERQKLMFRVKAQLTPSSRGSIAPHLKAGMPGVAWIKTAEQLPWPKTL 351


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.128    0.347 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 888,445
Number of extensions: 32811
Number of successful extensions: 224
Number of sequences better than 1.0e-08: 6
Number of HSP's gapped: 223
Number of HSP's successfully gapped: 6
Length of query: 358
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 272
Effective length of database: 1,212,660
Effective search space: 329843520
Effective search space used: 329843520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)