BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1668.p
         (199 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311136|ref|YP_003775228.1| threonine efflux protein [Herba...   336   6e-94

>gi|300311136|ref|YP_003775228.1| threonine efflux protein
           [Herbaspirillum seropedicae SmR1]
          Length = 199

 Score =  336 bits (862), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 163/198 (82%), Positives = 182/198 (91%)

Query: 1   MIDALLPLMSFAFVSSITPGPNNIMLTSSGIWFGFRRSLPHLLGITFGFGVLLAVCAFGI 60
           MI+ LLPLMSFAFVSSITPGPNNIMLTSSGIWFGFRRSLPH+LGITFGFGVLLA+CAFGI
Sbjct: 1   MIETLLPLMSFAFVSSITPGPNNIMLTSSGIWFGFRRSLPHMLGITFGFGVLLALCAFGI 60

Query: 61  GELVVALPQVVLLLKALGCAYLLYLAWQLRHMAVAQAAERALQPMSFWAAAMFQFANPKA 120
           GELV+A+PQ+VLLLKA+GCAYLLYLAWQLR M VA A ERA QPMSF AAA+FQFANPKA
Sbjct: 61  GELVIAVPQLVLLLKAMGCAYLLYLAWQLRRMGVAGAGERAAQPMSFGAAALFQFANPKA 120

Query: 121 WVMAITGASAFMPLLHEHAGRLAILIYCAVFCVVNLPCVSVWAGAGSLLRRYLEEPLWRV 180
           WVMA+TGASAFMP+LH+  G LAIL+YC VFC +NLPCVSVWAGAG++LRRYLE PLWR+
Sbjct: 121 WVMAVTGASAFMPMLHKLPGALAILVYCLVFCAINLPCVSVWAGAGAVLRRYLERPLWRM 180

Query: 181 VFATTMIVLTLYAALAIW 198
            FA  M++LTLY+ALAIW
Sbjct: 181 AFAAVMVLLTLYSALAIW 198


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.333    0.141    0.463 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 579,230
Number of extensions: 20623
Number of successful extensions: 126
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 2
Length of query: 199
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 118
Effective length of database: 1,236,335
Effective search space: 145887530
Effective search space used: 145887530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 128 (53.9 bits)