BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1664.p (567 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311132|ref|YP_003775224.1| ABC-type bacteriocin/lantibioti... 954 0.0 gi|300312350|ref|YP_003776442.1| bacteriocin/lantibiotic exporte... 211 1e-55 gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclol... 172 6e-44 gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPas... 142 7e-35 gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC trans... 110 3e-25 >gi|300311132|ref|YP_003775224.1| ABC-type bacteriocin/lantibiotic ATPase/permease fusion exporter protein [Herbaspirillum seropedicae SmR1] Length = 567 Score = 954 bits (2466), Expect = 0.0, Method: Compositional matrix adjust. Identities = 506/567 (89%), Positives = 544/567 (95%) Query: 1 MNASQPVHIDQPQALQDLRSDPSYLTLLRAYGSRFVEIIVAGVLVNLLGLLLPLYSRLIY 60 MNAS+ VHIDQPQ LQDLR+DPSYL+LLRAYGSRFVEIIVAG++VN+LGLL+PLYSRLIY Sbjct: 1 MNASEQVHIDQPQVLQDLRADPSYLSLLRAYGSRFVEIIVAGIVVNVLGLLMPLYSRLIY 60 Query: 61 DKVLGNHIPETLWALTLGMLLFIALELMLRVIRVYYTEQLAGRLDGEFDEVSARRLLTAK 120 DKV+GNHIPETLWALTLGMLLF+ALEL+LR+IRVYYTEQLAGRLD EFDEVSARR+LTA+ Sbjct: 61 DKVIGNHIPETLWALTLGMLLFVALELVLRIIRVYYTEQLAGRLDSEFDEVSARRMLTAR 120 Query: 121 VQAPVGVVLARYRDLSAARDLLSSNYMLLLVDLPFLVLYLVVLGLIGGHMVWVLLVGGGL 180 VQAPVGVVLARYRDLSAARDL+SSNYMLLLVDLPFL+LYLVVLGLIGGHMVWVLLVGGGL Sbjct: 121 VQAPVGVVLARYRDLSAARDLMSSNYMLLLVDLPFLLLYLVVLGLIGGHMVWVLLVGGGL 180 Query: 181 LVGLQLLLKVPANDYAHAAMKAGTGKIDKLASIVYGMETLKTTPLQDRLMRAFLIDAATN 240 LVGLQLLLKVP NDYA++AMKAGTGK+DKLASIVYGMETLKT+PLQ RL+RAFL DA+ N Sbjct: 181 LVGLQLLLKVPGNDYANSAMKAGTGKVDKLASIVYGMETLKTSPLQHRLLRAFLADASAN 240 Query: 241 AVAQAKSRFWVNTSYAVSSVGYTLVSVATLVVGVYLVEENLLTVGALIACSLLISRATTV 300 AVAQAKSRFW+NTSYA+SSVGYTL+SVATLVVGVYLVE+NLLTVGALIACSLLISRA TV Sbjct: 241 AVAQAKSRFWMNTSYAISSVGYTLISVATLVVGVYLVEDNLLTVGALIACSLLISRAATV 300 Query: 301 LSSLAALLGRIEMFRRARAEFDQLFEDQPQRASADVLRQEMRGLIQVGNLLLHLDKKENP 360 LSSLAA LGRIEMFRRARAEFDQLFE+ Q +ADVLRQ+MRGLIQVGNLLLHLDKKE P Sbjct: 301 LSSLAAFLGRIEMFRRARAEFDQLFEEPEQGPTADVLRQDMRGLIQVGNLLLHLDKKETP 360 Query: 361 TLKNVSLTIQPGEKVGIVGRSGSGKSTLLRALAGLHHPDEGHVLIDGVAVTAYAPEVRMR 420 TL+N+SLTIQPGEKVGIVGRSGSGKSTLLR LAGLH +EGHVLIDGVAVTAYA EVRMR Sbjct: 361 TLRNISLTIQPGEKVGIVGRSGSGKSTLLRTLAGLHQAEEGHVLIDGVAVTAYAEEVRMR 420 Query: 421 CIGFKPQEPFLFDGTVAANIFIGDRVPGQVYEAALAVSSLDDLIARGELRLDQAIKAPGN 480 CIGFKPQEPFLFDGTVAANIF+GDRVPGQVYEAALAVSSLDDLIARGELRLDQ IKAPGN Sbjct: 421 CIGFKPQEPFLFDGTVAANIFVGDRVPGQVYEAALAVSSLDDLIARGELRLDQLIKAPGN 480 Query: 481 LSGGQRQMVALARVIAATPRVLLLDEPTTGVDQQSEARIIERLVAYAGNRTLVVATHSPA 540 LSGGQRQMVALARVIA TPR+LLLDEPTTG+DQQ+EARIIERLV YAG RTLVVATHSPA Sbjct: 481 LSGGQRQMVALARVIACTPRILLLDEPTTGIDQQTEARIIERLVGYAGGRTLVVATHSPA 540 Query: 541 LLRHVERIIVIDGGRIVADGPRDQILQ 567 LLRH++RI+VIDGGRIVADGPR QILQ Sbjct: 541 LLRHMDRIVVIDGGRIVADGPRAQILQ 567 >gi|300312350|ref|YP_003776442.1| bacteriocin/lantibiotic exporter/double-glycine peptidase domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 730 Score = 211 bits (538), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 171/559 (30%), Positives = 281/559 (50%), Gaps = 24/559 (4%) Query: 24 YLTLLRAYGSRFVEIIVAGVLVNLLGLLLPLYSRLIYDKVLGNHIPETLWALTLGMLLFI 83 +L + + +EI+VA V+++++ L ++S +YD+V+ H TL L +G+ L I Sbjct: 163 FLDAIGEFRPVLIEIVVASVVMSIIALGASIFSMQVYDRVIPTHGVATLIVLAIGVGLAI 222 Query: 84 ALELMLRVIRVYYTEQLAGRLDGEFDEVSARRLLTAKV-QAP--VGVVLARYRDLSAARD 140 EL ++ R + +++ LD + + RLL +V Q P VG + + R R Sbjct: 223 LFELGMKFARSHIMDKVVSGLDAKLSQALYERLLAVRVDQLPGSVGSLAGQLRGYEQIRS 282 Query: 141 LLSSNYMLLLVDLPFLVLYLVVLGLIGG-HMVWVLLVGGGLLVGLQLLLKVPANDYAHAA 199 +S + LVDLP +L+++V+ LI M V V G + + + L A + Sbjct: 283 FYTSQTLFTLVDLPLGLLFVLVIALIASPWMALVPTVFGVVAILIGYLSNRKVARLADKS 342 Query: 200 MKAGTGKIDKLASIVYGMETLKTTPLQDRLMRAFLIDAATNAVAQAKSRFWVNTSYAVSS 259 A K L V G+ET+K+ + + ++ +A + + R + + +++ Sbjct: 343 AAASNLKTGLLVETVEGVETIKSGSGGWKFLSRWIDVSAESIRSDMAMRAIGDHAGYIAA 402 Query: 260 VGYTLVSVATLVVGVYLVEENLLTVGALIACSLLISRATTVLSSLAALLGRIEMFRRARA 319 L T+++G +LV +T+GALIACS+L R ++ + L+ + + A Sbjct: 403 TLQQLSYSTTVIIGAFLVINGQITMGALIACSILGGRILAPVAMIPGLMVQRAHTKATLA 462 Query: 320 EFDQLFEDQPQRAS-----ADVLRQEMR----GLIQVGNLLLHLDKKENPTLKNVSLTIQ 370 ++++ Q + S D LR E R G++L + + LTI Sbjct: 463 GLEKIYALQTDQGSERQLTPDNLRGEFRIEEAKFTYAGSMLNAMTIDQ--------LTIN 514 Query: 371 PGEKVGIVGRSGSGKSTLLRALAGLHHPDEGHVLIDGVAVTAYAPEVRMRCIGFKPQEPF 430 GE+V ++G G+GKST+LR L+GL+ P +G +L+DG+ + + IG+ Q+ Sbjct: 515 AGERVAVLGPIGAGKSTILRLLSGLYRPQQGRILLDGLDMANINRLTLNQHIGYLQQDHR 574 Query: 431 LFDGTVAANIFIGDRVPGQ-VYEAALAVSSLDDLIARGELRLDQAIKAPG-NLSGGQRQM 488 LF G++ N+ IG PG V + + L L++ LD I+ G LSGGQ+Q+ Sbjct: 575 LFVGSLRENLLIGLPDPGDDVLRQVMERTGLLRLVSSHPKGLDLPIQEGGRGLSGGQKQL 634 Query: 489 VALARVIAATPRVLLLDEPTTGVDQQSEARIIERL-VAYAGNRTLVVATHSPALLRHVER 547 VA R++ P V LLDEPT +D+ E + L +G RTLVV TH PA L V+R Sbjct: 635 VAFTRLLLCQPNVFLLDEPTASMDEDLERHCLNVLNQEISGGRTLVVVTHKPAFLPMVDR 694 Query: 548 IIVIDGGRIVADGPRDQIL 566 +IV+ G RIV DGPRD IL Sbjct: 695 VIVVVGNRIVLDGPRDVIL 713 >gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclolysin-type) secretion ABC transporter protein [Herbaspirillum seropedicae SmR1] Length = 726 Score = 172 bits (436), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 152/553 (27%), Positives = 270/553 (48%), Gaps = 28/553 (5%) Query: 31 YGSRFVEIIVAGVLVNLLGLLLPLYSRLIYDKVLGNHIPETLWALTLGMLLFIALELMLR 90 Y E+++ +++ L+GL+ P++ +++ DKVL NH TL + +G++ E +L Sbjct: 159 YRKTLAEVLLISLVLQLIGLITPMFFQVVMDKVLVNHAMMTLNVIAVGLIAATVFEAVLT 218 Query: 91 VIRVYYTEQLAGRLDGEFDEVSARRLLTAKVQAPV--------GVVLARYRDLSAARDLL 142 IR + ++D E RL + + P+ G +AR R+L R L Sbjct: 219 GIRTAIFANASSKIDVEL----GSRLFSHLLSLPLSYFQVRRAGDSIARVRELENIRSFL 274 Query: 143 SSNYMLLLVDLPFLVLYLVVLGLIGGHMVWVLLVGGGLLVGLQL----LLKVPANDYAHA 198 + N M L++D+ F ++L V+ + ++L + V L L LL+ ND + Sbjct: 275 TGNAMTLVLDIMFSFVFLGVMLWYSVSLSLIVLASIPVYVLLSLVFTPLLRERLNDKFNK 334 Query: 199 AMKAGTGKIDKLASIVYGMETLKTTPLQDRLMRAFLID-AATNAVAQAKSRFWVNTSYAV 257 + + + ++ L GM+T+K ++ R + + AA A + + S AV Sbjct: 335 SAENQSFLVETLT----GMDTVKAMAVEPRWQQKWDKQLAAYVAAGLTTTNISLLASGAV 390 Query: 258 SSVGYTLVSVATLVVGVYLVEENLLTVGALIACSLLISRATTVLSSLAALLGRIEMFRRA 317 V LV+V + +G LV +N ++VG L+A ++L + + + LA L + + Sbjct: 391 GLVS-KLVTVGIMWLGALLVVKNEMSVGELVAFNMLAGQVASPILRLAQLWNDFQQIGIS 449 Query: 318 RAEFDQLFEDQPQRASADVLRQEMRGLIQVGNLLLHLDKKENP-TLKNVSLTIQPGEKVG 376 + + + + + A + G I +L+ + E P ++ +SL I+PGE +G Sbjct: 450 MSRLADVLDARTEVAGNRTRLPRVNGAISF-DLVSFRYRPETPEVIRGLSLQIRPGEVIG 508 Query: 377 IVGRSGSGKSTLLRALAGLHHPDEGHVLIDGVAVTAYAPEVRMRCIGFKPQEPFLFDGTV 436 IVGRSGSGKSTL + + L+ + G + +DG + + IG QE LF ++ Sbjct: 509 IVGRSGSGKSTLAKLVQRLYICETGRISVDGQDIAIIDTASLRQQIGVVLQENTLFSRSI 568 Query: 437 AANIFIGD-RVP-GQVYEAALAVSSLDDLIARGELRLDQAIKAPGN-LSGGQRQMVALAR 493 NI + D P Q+ EAA ++ D I D + G+ LSGGQRQ +A+AR Sbjct: 569 RDNIALADPSTPIEQIIEAA-KLAGAHDFICELPEGYDTMVGEQGSGLSGGQRQRIAIAR 627 Query: 494 VIAATPRVLLLDEPTTGVDQQSEARIIERLVAYAGNRTLVVATHSPALLRHVERIIVIDG 553 + P +L+ DE T+ +D +SE I + + RT+++ H + +R +RIIV++ Sbjct: 628 ALITNPGILIFDEATSALDYESEKIIQDNMRQICAGRTVLIIAHRLSAVRDADRIIVMER 687 Query: 554 GRIVADGPRDQIL 566 GR+ G D+++ Sbjct: 688 GRVAESGSHDELI 700 >gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 758 Score = 142 bits (358), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 118/387 (30%), Positives = 194/387 (50%), Gaps = 30/387 (7%) Query: 200 MKAGTGKIDK--------LASIVYGMETLKTTPLQDRLMRAFLIDAATNAVAQAKSRFWV 251 ++ G KID+ LA + G+ +K + R + F N + + V Sbjct: 350 LRHGFEKIDRIWSEVTNVLADTIPGIRVVKAFAQEKREVARFREANRHNLMVNDR----V 405 Query: 252 NTSYAVSSVGYT-LVSVATLVV---GVYLVEENLLTVGALIACSLLISRATTVLSSLAAL 307 N +++ + T L V LVV G++ V N +TVG L A ISR T L S++ + Sbjct: 406 NKIWSLFTPTVTFLTEVGLLVVWVFGIWQVSSNQITVGVLTAFLAYISRFYTRLDSMSRI 465 Query: 308 LGRIEMFRRARAEFDQLFE------DQPQRASADVLRQEMRGLIQVGNLLLHLDKKENPT 361 + + ++A A ++F+ P+ A+ V ++++G I+V N+ + Sbjct: 466 ---VSVTQKAAAGAKRIFDILDHVSSVPEPANP-VHLEKVQGAIEVRNIGFRYGNRA--V 519 Query: 362 LKNVSLTIQPGEKVGIVGRSGSGKSTLLRALAGLHHPDEGHVLIDGVAVTAYAPEVRMRC 421 ++N+SL+I PGE +G+VG SGSGKST++ + + EG + IDGV + + R Sbjct: 520 IRNMSLSIAPGEMIGLVGHSGSGKSTMVNLICRFYDVSEGAIRIDGVDIRSLPISEYRRN 579 Query: 422 IGFKPQEPFLFDGTVAANIFIGD-RVPGQVYEAALAVSSLDDLIARGELRLDQAIKAPGN 480 IG QEPFLF GT+A NI G + AA + + I R D + G Sbjct: 580 IGLVLQEPFLFFGTIAENIAYGKPEATREEIIAAARAAHAHEFILRLPQGYDSLVGERGQ 639 Query: 481 -LSGGQRQMVALARVIAATPRVLLLDEPTTGVDQQSEARIIERLVAYAGNRTLVVATHSP 539 LSGG+RQ +++AR + PR+L+LDE T+ VD +E I + L RT + H Sbjct: 640 ALSGGERQRISIARALLIDPRILILDEATSSVDTTTEKEIQKALDNLVQGRTTIAIAHRL 699 Query: 540 ALLRHVERIIVIDGGRIVADGPRDQIL 566 + LR +R++V+D G++V G ++++ Sbjct: 700 STLRKADRLVVLDRGQVVEVGNHEELM 726 >gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC transporter permease/ATPase [Herbaspirillum seropedicae SmR1] Length = 634 Score = 110 bits (276), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 126/456 (27%), Positives = 207/456 (45%), Gaps = 48/456 (10%) Query: 133 RDLSAARDLLSS--NYMLLLVDLPFLV-LYLVVLGLIGGHMVWVLLVGGGLLVGLQLLLK 189 RD+ +SS +Y L + LP L+ + LV+ LI + VW ++ G LV +L Sbjct: 143 RDIERGTRGVSSLVSYTLFSI-LPTLIEIALVLAYLITHYDVWFSVITAGALV-CYILFT 200 Query: 190 VPANDY------------AHAAMKAGTGKIDKLASIVYGMETLKTTPLQDRLMRAFLIDA 237 + ++ +HA +A ++ +G E + + L R Sbjct: 201 ITVTEWRTHFRRTMNELDSHANTRAIDSLLNYETVKYFGNEEFEARRYDEGLQRY----- 255 Query: 238 ATNAVAQAKSRFWVNT-SYAVSSVGYTLVSVATLVVGVYLVEENLLTVGALIACSLLISR 296 AV S +NT A+ ++ TL+ + VGV + +T+G ++ + + + Sbjct: 256 ERAAVKSQSSLSLLNTGQSAIIAIAVTLI-LWRATVGVI---DGSMTLGDMVLVNAFMIQ 311 Query: 297 ATTVLSSLAALLGRIEMFRRARAEFDQLF----EDQPQRASADVLRQEMRGLIQVGNLLL 352 L+ L L I +++ A+ ++LF E + SAD + +G NL Sbjct: 312 LYIPLNFLGVLYREI---KQSLADMERLFSLLEEHREVADSADAKPLKTQG----ANLHF 364 Query: 353 -HLD---KKENPTLKNVSLTIQPGEKVGIVGRSGSGKSTLLRALAGLHHPDEGHVLIDGV 408 H+D ++ L +V T+Q G +VG SGSGKSTL R L + D G + IDG Sbjct: 365 DHVDFSYERNRQILFDVDFTVQAGTTTAVVGHSGSGKSTLSRLLYRFYDVDAGAIRIDGQ 424 Query: 409 AVTAYAPEVRMRCIGFKPQEPFLFDGTVAANIFIGDRVPGQVYE---AALAVSSLDDLIA 465 + + IG PQ+ LF+ T+ NI G PG E AA + + D I Sbjct: 425 DLRTVTQASLRQAIGIVPQDTVLFNDTIEYNIAYGK--PGATREQIVAAAKAAYIHDFIE 482 Query: 466 RGELRLDQAIKAPG-NLSGGQRQMVALARVIAATPRVLLLDEPTTGVDQQSEARIIERLV 524 + G LSGG++Q VA+AR + P +L+ DE T+ +D ++E I ++L Sbjct: 483 SLPDGYASMVGERGLKLSGGEKQRVAIARTLLKDPAILIFDEATSALDSRAEQAIQQQLE 542 Query: 525 AYAGNRTLVVATHSPALLRHVERIIVIDGGRIVADG 560 A RT +V H + + + ++I+V+D GRIV G Sbjct: 543 EIARERTTLVIAHRLSTIVNAQQILVLDHGRIVERG 578 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.139 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,555,928 Number of extensions: 61769 Number of successful extensions: 668 Number of sequences better than 1.0e-08: 130 Number of HSP's gapped: 489 Number of HSP's successfully gapped: 148 Length of query: 567 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 477 Effective length of database: 1,193,720 Effective search space: 569404440 Effective search space used: 569404440 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 133 (55.8 bits)