BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1663.p
         (555 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311131|ref|YP_003775223.1| hypothetical protein Hsero_1805...  1068   0.0  
gi|300312348|ref|YP_003776440.1| centriolin protein [Herbaspiril...    66   6e-12

>gi|300311131|ref|YP_003775223.1| hypothetical protein Hsero_1805
           [Herbaspirillum seropedicae SmR1]
          Length = 553

 Score = 1068 bits (2763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 530/549 (96%), Positives = 546/549 (99%)

Query: 1   MKNLRQFYALAAIPTLLLLLGAFLFRGFVGHAIQINPFLNLFIIAVAVFGVSLIGYNLYR 60
           MKNLRQFYALAAIPTLLLLLGAFLFRGFV HAIQINPFLNLFIIAVAVFG++LIGYNL+R
Sbjct: 1   MKNLRQFYALAAIPTLLLLLGAFLFRGFVLHAIQINPFLNLFIIAVAVFGIALIGYNLWR 60

Query: 61  VNWEYAKLMQFYDRTKAGESMESLVKAPEFDGTEIGQVLVSVASTKGRLTSRIEQETIEG 120
           VNWE+AKLMQFY+RTKAGESMESLVKAPEF+GTEIGQVLVSVASTKGRLTSRIEQETIEG
Sbjct: 61  VNWEHAKLMQFYERTKAGESMESLVKAPEFEGTEIGQVLVSVASTKGRLTSRIEQETIEG 120

Query: 121 SLHDLRAHLDAKTEFPQFLTGFMIALGLLGTFIGLLETLVSTAALIDGFGKASAGGDMDA 180
           SLHDLRAHLDAKTEFPQFLTGFMIALGLLGTFIGLLETLVSTAALIDGFGKAS+GGDMDA
Sbjct: 121 SLHDLRAHLDAKTEFPQFLTGFMIALGLLGTFIGLLETLVSTAALIDGFGKASSGGDMDA 180

Query: 181 SFMHLVADLQKPLASMGTAFSASMFGLIGSLALGLTLTPLRAASKKLVTRARECISDMVQ 240
           SFMHLVADLQKPLASMGTAFSASMFGLIGSLALGLTLTPLRAASKKLV+RARECISDMVQ
Sbjct: 181 SFMHLVADLQKPLASMGTAFSASMFGLIGSLALGLTLTPLRAASKKLVSRARECISDMVQ 240

Query: 241 HVVHDMSGPAATQRQGVSETFLAEFLQDLMVLQRESIMAARNSSEASLQAGIKLEGLNDR 300
           HVVHDMSGPAATQRQGVSE+FLAEFLQDLMVLQRESIMAARNSSEASLQAGIKLEGLNDR
Sbjct: 241 HVVHDMSGPAATQRQGVSESFLAEFLQDLMVLQRESIMAARNSSEASLQAGIKLEGLNDR 300

Query: 301 LNNIVQLFNDSMEESRSLRQLVAFGPRMHETAQQTLEEIRNVGQLINTKITSARDLSDSL 360
           LNNIVQLFNDSMEESRSLRQLVAFGPRMHETAQQTLEEIRNVGQLINTKITSARDLSDSL
Sbjct: 301 LNNIVQLFNDSMEESRSLRQLVAFGPRMHETAQQTLEEIRNVGQLINTKITSARDLSDSL 360

Query: 361 SSLEERLSVNGDIANRTFEVLPQIVTTIQAGQLALSSALTSLQAQQGEISNMNEKSAQNI 420
           SSLEERLSVNGDIANRTFEVLPQIVTTIQAGQLALSSALTSLQ QQGEI+NMNEK+AQNI
Sbjct: 361 SSLEERLSVNGDIANRTFEVLPQIVTTIQAGQLALSSALTSLQTQQGEIANMNEKNAQNI 420

Query: 421 AQLPALLNQISVRLADEMGAIQYQSELQATVAARLNELGSTIGENSSNMARDALSARQLQ 480
           AQLPALLNQISVRLADEMGAIQYQ ELQATVAARLNELG+TIGENSSNMARDALSARQLQ
Sbjct: 421 AQLPALLNQISVRLADEMGAIQYQGELQATVAARLNELGNTIGENSSNMARDALSARQLQ 480

Query: 481 IDLAKHMATQNDRVKNLGAIPQSLTSITEALMRQNINWQTVIEEMRSGRQTMVKDLRLEL 540
           IDLAKHMATQNDRVKNLGAIPQSLTSITEALMRQNINWQTVI+EMR+GRQTMVKDLRLE+
Sbjct: 481 IDLAKHMATQNDRVKNLGAIPQSLTSITEALMRQNINWQTVIDEMRTGRQTMVKDLRLEM 540

Query: 541 REAIRELTA 549
           REAIRE+TA
Sbjct: 541 REAIREITA 549


>gi|300312348|ref|YP_003776440.1| centriolin protein [Herbaspirillum
           seropedicae SmR1]
          Length = 517

 Score = 66.2 bits (160), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 76/160 (47%), Gaps = 8/160 (5%)

Query: 74  RTKAGESMESLVKAPEFDGTEIGQVLVSVASTKGRLTSRIEQETIEGSLHDLRAHLDAKT 133
           RT+     + LVK  E    +I ++L  + +  GR T R ++  ++         L  +T
Sbjct: 97  RTEGAALEQELVK--EDRNFDIDRLLRQLKNADGR-TIRFDRTQLQHQFDGFAGDLQRRT 153

Query: 134 EFPQFLTGFMIALGLLGTFIGLLETLVSTAALIDGFGK--ASAGGDMDASFMHLVADLQK 191
             PQ++   +I LGL GTF+GL+ TL   A LI  F       G DM   F   ++    
Sbjct: 154 LLPQYIANTLIGLGLFGTFLGLIVTLKEVALLIGMFSSIGTEGGSDMMGKFFERMSG--- 210

Query: 192 PLASMGTAFSASMFGLIGSLALGLTLTPLRAASKKLVTRA 231
           PLA MG AF AS+ GL GS+   + L   +   + +  RA
Sbjct: 211 PLAGMGDAFVASLLGLGGSIVNNVQLLACKKLQRLVSARA 250


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.131    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,270,905
Number of extensions: 45677
Number of successful extensions: 266
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 265
Number of HSP's successfully gapped: 2
Length of query: 555
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 465
Effective length of database: 1,193,720
Effective search space: 555079800
Effective search space used: 555079800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)