BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1660.p
         (551 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311128|ref|YP_003775220.1| outer membrane protein [Herbasp...   863   0.0  

>gi|300311128|ref|YP_003775220.1| outer membrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 547

 Score =  863 bits (2230), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/548 (79%), Positives = 480/548 (87%), Gaps = 6/548 (1%)

Query: 1   MALMIVLKSKRFVLAVSLGLAAHPAAVVWAADKLSPSGEAAVSGQAQPVRLDNTLDRPPQ 60
           M LM V KSKRF++ VSLGLA H   +V AAD      E     Q         LD PPQ
Sbjct: 1   MVLMKV-KSKRFLIGVSLGLATH--QMVSAADTPPAFTEPPAPTQVVSPASAAPLDSPPQ 57

Query: 61  IRLGADPAGPSATDYRLPGLPADTPASSAQDEILLLLRQSDPDFSGNRIALPQISIVTEG 120
           IRLGADP G +  D++LP LP ++   S QDEIL LLRQ+DP+FSGN I LPQIS+V EG
Sbjct: 58  IRLGADPGGAAVGDFKLPALPGESAMGSPQDEILQLLRQADPEFSGNAIVLPQISVVPEG 117

Query: 121 ETVPDLTLRSVLDLALGNSYSFAATAAQADQARYAAKATAGQLGPTLDLRAQKGNEYSSP 180
             V DLTL  VLDLA+ NSYS+AAT+AQADQARYAA+ATAGQ+GPTLD+RAQKG EYSSP
Sbjct: 118 APVNDLTLSQVLDLAVNNSYSYAATSAQADQARYAARATAGQMGPTLDVRAQKGQEYSSP 177

Query: 181 SSVLDPNTGQIQRASYHKRWDVTLIGRQPIFAPGSYYDYRKSSSLADAADLRRDDARENL 240
           SSV+DPNTG ++RAS HKRWDVT+IGRQP+FAPGSY+DYRK+SSLADAADLRR+DARE L
Sbjct: 178 SSVIDPNTGLVRRASDHKRWDVTVIGRQPVFAPGSYFDYRKASSLADAADLRREDARETL 237

Query: 241 YYNAIKAYYDVMRAYATLSFSRSYAQRMGSLLDYMSKRLEGGGASRIDFERVRGRSLTAQ 300
           YY AIK+YYDVMRAYATLSFSRSYAQRM +LL+YM KRLEGGGASRIDFERVRGRSLTAQ
Sbjct: 238 YYTAIKSYYDVMRAYATLSFSRSYAQRMNALLEYMRKRLEGGGASRIDFERVRGRSLTAQ 297

Query: 301 SAVAEAEGALESAMVSLNQITGRKIEQIEVPDHMMPVVPDTSKLALQDIYETNPGVRAAR 360
           +AVAEAEGALESAMVSLNQITGRKIEQ+EVPDHMMP VPDTSKLAL+DIY+TNPGVRAAR
Sbjct: 298 AAVAEAEGALESAMVSLNQITGRKIEQLEVPDHMMPPVPDTSKLALKDIYDTNPGVRAAR 357

Query: 361 RDVDAANLELKSARAKFSPTLAVEWTQTKTRGAGGAIDTTD---NSLQLTTDRRLMMVVT 417
           +DV+AAN ELKSARAKFSPTLAVE+TQTKTRGAGGAIDTT+   NSLQL+TDRRLM+V+T
Sbjct: 358 QDVEAANQELKSARAKFSPTLAVEFTQTKTRGAGGAIDTTNPTANSLQLSTDRRLMLVMT 417

Query: 418 MNLLNGGSDVYYSKQAGAKYVEKSNTALDLERKLREQIEINYRTLGAVRKRMEISRQAYL 477
           MNLLNGGSDVYYSKQAGAKYVEKSNT LDLERKLREQIEINYRTLGAVRKRM+ISRQAYL
Sbjct: 418 MNLLNGGSDVYYSKQAGAKYVEKSNTVLDLERKLREQIEINYRTLGAVRKRMDISRQAYL 477

Query: 478 TNANVADVFLEQLSTGSKQLLDVLDAYQQAYQARMDFANLLFQQADISYQILRNTGRASA 537
           TNANVADVFL+QLS GSKQL+DVLDAYQQAYQAR+DF+NLLFQQADISYQILRNTGRASA
Sbjct: 478 TNANVADVFLDQLSAGSKQLIDVLDAYQQAYQARVDFSNLLFQQADISYQILRNTGRASA 537

Query: 538 LETLPTRA 545
               PT+A
Sbjct: 538 AVLTPTQA 545


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.129    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,455,685
Number of extensions: 55672
Number of successful extensions: 244
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 243
Number of HSP's successfully gapped: 3
Length of query: 551
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 461
Effective length of database: 1,193,720
Effective search space: 550304920
Effective search space used: 550304920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 133 (55.8 bits)