BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1659.p
         (636 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311127|ref|YP_003775219.1| HSP90 family high temperature m...  1250   0.0  

>gi|300311127|ref|YP_003775219.1| HSP90 family high temperature
           molecular chaperone G protein [Herbaspirillum
           seropedicae SmR1]
          Length = 636

 Score = 1250 bits (3234), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 619/636 (97%), Positives = 631/636 (99%)

Query: 1   MASEKQTMGFQAEVKQLLQLMIHSLYSNKEIFLRELVSNASDAADKLRFEAINNGSLFED 60
           MA+EKQTMGFQAEVKQLLQLMIHSLYSNKEIFLRELVSNASDAADKLRFEAINN SLFED
Sbjct: 1   MATEKQTMGFQAEVKQLLQLMIHSLYSNKEIFLRELVSNASDAADKLRFEAINNASLFED 60

Query: 61  DPELKIKISFDKAARTITISDNGIGMNRDEAISHLGTIAKSGTKEFFSRLSGDQQKDAAL 120
           DPELKI+ISFDKAARTITISDNGIGMNR+EAISHLGTIAKSGTKEFFSRLSGDQQKDAAL
Sbjct: 61  DPELKIRISFDKAARTITISDNGIGMNREEAISHLGTIAKSGTKEFFSRLSGDQQKDAAL 120

Query: 121 IGQFGVGFYSGFIIADRITVETRRAGTPASEGVRWESEGAGDFSIEQIDKPGRGTDIILH 180
           IGQFGVGFYSGFIIADRITVETRRAGTPASEGVRWESEGAGDFSIEQIDKP RGTDIILH
Sbjct: 121 IGQFGVGFYSGFIIADRITVETRRAGTPASEGVRWESEGAGDFSIEQIDKPRRGTDIILH 180

Query: 181 LREGEDEFLSSWQLKSIIRKYSDHISLPILMNKEEWDEEKKETVQKDELETVNQASALWT 240
           LREGEDEFLSSWQLKSIIRKYSDHISLPI MNKEEWDEEKKETVQKDELETVNQASALWT
Sbjct: 181 LREGEDEFLSSWQLKSIIRKYSDHISLPIQMNKEEWDEEKKETVQKDELETVNQASALWT 240

Query: 241 RSKSDITPEQYEEFYKHVSHDFGAPLAYTHNRVEGRSEYTQLLYIPARAPFDLWDRNKRG 300
           RSKS+ITPEQYEEFYKHVSHDFGAPLAYTHNRVEGRSEYTQLLYIPARAPFDLWDRNKRG
Sbjct: 241 RSKSEITPEQYEEFYKHVSHDFGAPLAYTHNRVEGRSEYTQLLYIPARAPFDLWDRNKRG 300

Query: 301 GIKLYVKRVFIMDDAEQLMPVYLRFVKGVIDSADLPLNVSREILQESRDVRAIRDGSAKR 360
           GIKLYVKRVFIMDDAEQLMPVYLRFVKGVIDSADLPLNVSREILQESRDVRAIRDGSAKR
Sbjct: 301 GIKLYVKRVFIMDDAEQLMPVYLRFVKGVIDSADLPLNVSREILQESRDVRAIRDGSAKR 360

Query: 361 VLSLLEELANSEEQAQKDKYTTFWTEFGQVLKEGIGEDAANKERIAKLLRFASTHNDSDV 420
           VLSLLEELANS+EQAQKDKY+TFWTEFGQVLKEG+GEDAANKERIAKLLRFASTHNDSDV
Sbjct: 361 VLSLLEELANSDEQAQKDKYSTFWTEFGQVLKEGVGEDAANKERIAKLLRFASTHNDSDV 420

Query: 421 QNVALADYVGRMKEGQDKIYYVTAETYQAAKNSPHLEIFRKKGVEVLLLTDRVDEWMLSF 480
           QNV+LADYVGRMKEGQDKIYYVTAET+QAAKNSPHLEIFRKKGVEVLLLTDRVDEWMLSF
Sbjct: 421 QNVSLADYVGRMKEGQDKIYYVTAETWQAAKNSPHLEIFRKKGVEVLLLTDRVDEWMLSF 480

Query: 481 LTEFEGKELASVAKGGLDLGKLENEAEKKQHEETQAEYKELVEKMKTALGDKAKEVRVTF 540
           LT+F+GKELASVAKGGLDLGKLENE EKKQHEETQAEYK+LVEKMKTAL DKAKEVRVTF
Sbjct: 481 LTDFDGKELASVAKGGLDLGKLENEDEKKQHEETQAEYKDLVEKMKTALADKAKEVRVTF 540

Query: 541 RLTDSPACLVADENELSGNLVRMLKAAGQAAPESKPTLEINPDHPLVQRLKYEEARFDDW 600
           RLTDSPACLVADENELSGNLVRMLKAAGQAAPESKPTLEINPDHPLVQRLKYEEARFDDW
Sbjct: 541 RLTDSPACLVADENELSGNLVRMLKAAGQAAPESKPTLEINPDHPLVQRLKYEEARFDDW 600

Query: 601 SHILYDQALLAEGGALADPASFVKRLNDMLLAMAAK 636
           SHILYDQALLAEGGALADPASFVKRLNDMLLAMAAK
Sbjct: 601 SHILYDQALLAEGGALADPASFVKRLNDMLLAMAAK 636


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.132    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,858,318
Number of extensions: 78029
Number of successful extensions: 233
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 233
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 545
Effective length of database: 1,188,985
Effective search space: 647996825
Effective search space used: 647996825
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 134 (56.2 bits)