BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1651.p (271 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311120|ref|YP_003775212.1| metal ion ABC transporter perip... 471 e-134 gi|300310325|ref|YP_003774417.1| metal ion ABC transporter perip... 276 2e-75 gi|300314030|ref|YP_003778122.1| metal ion ABC transporter perip... 272 2e-74 gi|300310887|ref|YP_003774979.1| metal ion ABC transporter perip... 197 1e-51 gi|300311637|ref|YP_003775729.1| metal ion ABC transporter perip... 161 6e-41 >gi|300311120|ref|YP_003775212.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 274 Score = 471 bits (1213), Expect = e-134, Method: Compositional matrix adjust. Identities = 242/274 (88%), Positives = 259/274 (94%), Gaps = 3/274 (1%) Query: 1 MHLAAI---IKRIAATAALTLALTPQGAGAQEKHKIKVGISVGSAEAIFEVVKKVAARDG 57 MH A+ IKR+AA AL+LAL PQ AQ+K KIKVGISVGSAEAIF+VVKKVAARDG Sbjct: 1 MHFASCFKNIKRLAAIGALSLALVPQLGQAQDKQKIKVGISVGSAEAIFDVVKKVAARDG 60 Query: 58 LEIQTVVFSDYLQPNAALAAGDLDANAFQHRPYLESQIAARGYKIVPVGLTITAPLGIYS 117 LEIQTVVFSDYLQPNAALAAGDLDANAFQHRPYLESQIAARGY+IVPVGLTITAPLGIYS Sbjct: 61 LEIQTVVFSDYLQPNAALAAGDLDANAFQHRPYLESQIAARGYRIVPVGLTITAPLGIYS 120 Query: 118 RKFKSVDQLPNGATIGIQNDPSNGNRALLLLQKAGLIKLKPGVGENGINATPLDIIDNPR 177 RKF+SV+QLP GA IGIQNDPSNGNRALLLLQKAGLI+LKPGVGENG+NATPLD+I+NPR Sbjct: 121 RKFRSVEQLPQGAAIGIQNDPSNGNRALLLLQKAGLIRLKPGVGENGVNATPLDVIENPR 180 Query: 178 KLKLIELDAAQLPRSLDDLAAASINNDYAYKAGLSLQKDTIAVEDPRGRYANIIATRVQD 237 KLKL+ELDAAQLPRSLDDLAAASINNDYA+KAGLSLQKDTIAVEDPRGRYANIIATR +D Sbjct: 181 KLKLVELDAAQLPRSLDDLAAASINNDYAFKAGLSLQKDTIAVEDPRGRYANIIATRAED 240 Query: 238 KDQPWVKKLVQAYHSEEVRKFIETEFKGSLVPAF 271 KD+PWV+KLVQAYHSEEVRKFIETEFKGSLVPAF Sbjct: 241 KDRPWVRKLVQAYHSEEVRKFIETEFKGSLVPAF 274 >gi|300310325|ref|YP_003774417.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 265 Score = 276 bits (705), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 146/262 (55%), Positives = 196/262 (74%), Gaps = 3/262 (1%) Query: 10 IAATAALTLALTPQGAGAQEKHKIKVGISVGSAEAIFEVVKKVAARDGLEIQTVVFSDYL 69 I A L LA A A + +IK+G++ G I E VKK+ +DG++++ + F+DY+ Sbjct: 7 IQFIAGLGLAAGLVSAPAFAQDQIKMGVTAGPHAEIMEQVKKLLEKDGVQMKVIEFTDYI 66 Query: 70 QPNAALAAGDLDANAFQHRPYLESQIAARGYKIVPVGLTITAPLGIYSRKFKSVDQLPNG 129 QPNAALAAGDLDAN++QH+PYL++QI RGYK V VG TIT P+G+YS+K KS++ L G Sbjct: 67 QPNAALAAGDLDANSYQHQPYLDAQIKDRGYKFVSVGSTITFPMGVYSKKIKSLNDLKQG 126 Query: 130 ATIGIQNDPSNGNRALLLLQKAGLIKLKPGVGENGINATPLDIIDNPRKLKLIELDAAQL 189 A +G+ NDP+NG RALL+LQ G+IKLK + G+ ATPLDI++NP+K+K++ELDAAQL Sbjct: 127 ARVGVPNDPTNGGRALLVLQAKGVIKLK---ADAGLKATPLDIVENPKKIKIVELDAAQL 183 Query: 190 PRSLDDLAAASINNDYAYKAGLSLQKDTIAVEDPRGRYANIIATRVQDKDQPWVKKLVQA 249 PRSLDD AA IN +YA AGLS KD IAVE G YAN+IA R+ DKD+PWV KLV+A Sbjct: 184 PRSLDDFDAAVINGNYAESAGLSPTKDAIAVEASTGPYANVIAVRIADKDKPWVAKLVKA 243 Query: 250 YHSEEVRKFIETEFKGSLVPAF 271 YHS EV+KF+ ++KGS++ ++ Sbjct: 244 YHSPEVKKFVLEKYKGSVITSW 265 >gi|300314030|ref|YP_003778122.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 276 Score = 272 bits (696), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 134/271 (49%), Positives = 189/271 (69%), Gaps = 3/271 (1%) Query: 4 AAIIKRIAATAALTLALTPQGAGAQEKHKIKVGISVGSAEAIFEVVKKVAARD--GLEIQ 61 A ++R++ LA A A I+VG++ G IFE ++V RD G +++ Sbjct: 6 ATWLRRLSTLMVSMLASLVLNAQAAADQVIRVGVTSGPHAQIFEQARRVFERDNPGYKVK 65 Query: 62 TVVFSDYLQPNAALAAGDLDANAFQHRPYLESQIAARGYKIVPVGLTITAPLGIYSRKFK 121 + F+DY+QPNAAL AG+LDAN++QHRP+L +QI RGYK+ G T+ P+ IYSRK++ Sbjct: 66 IIEFNDYIQPNAALDAGELDANSYQHRPFLNAQIKTRGYKLYAEGKTMIGPMAIYSRKYR 125 Query: 122 SVDQLPNGATIGIQNDPSNGNRALLLLQKAGLIKLKPGVGE-NGINATPLDIIDNPRKLK 180 ++ +P GA IGI NDP+N +R LLLLQK G IKL+ G+ G NATP+DI +NP+K K Sbjct: 126 KLEDVPVGARIGIPNDPANESRVLLLLQKHGFIKLRAGIDPLTGTNATPIDITENPKKWK 185 Query: 181 LIELDAAQLPRSLDDLAAASINNDYAYKAGLSLQKDTIAVEDPRGRYANIIATRVQDKDQ 240 +E+DAAQLPR+LDDL A+++N DYA KAGL+ +D++ VE YA +IA R +D+ Q Sbjct: 186 FVEIDAAQLPRTLDDLDASAVNADYAAKAGLNPARDSLVVESGDSPYACLIAVREKDRAQ 245 Query: 241 PWVKKLVQAYHSEEVRKFIETEFKGSLVPAF 271 PW+ KLVQAY S EV+++IETEFKG ++ A+ Sbjct: 246 PWLGKLVQAYQSPEVKRYIETEFKGGILAAW 276 >gi|300310887|ref|YP_003774979.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 263 Score = 197 bits (500), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 116/267 (43%), Positives = 163/267 (61%), Gaps = 9/267 (3%) Query: 6 IIKRIAATAALTLALTPQGAGAQEKHKIKVGISVGSAEAIFEVVKKVAARDGLEIQTVVF 65 +I + A AAL ++ GA A +K I V AE I E +K A++G+++Q VF Sbjct: 5 LIPHLFAGAALAFSV---GAHAADKLVI-AATPVPHAE-ILEHIKPALAKEGIDLQVKVF 59 Query: 66 SDYLQPNAALAAGDLDANAFQHRPYLESQIAARGYKI-VPVGLTITAPLGIYSRKFKSVD 124 +DY+QP A +D N F H+PYL+ + I VPV P YS+K+K + Sbjct: 60 TDYVQPAAQTNEKQVDGNFFLHQPYLDQFKKSHKNDIEVPVAKVHVEPFAAYSQKYKKIA 119 Query: 125 QLPNGATIGIQNDPSNGNRALLLLQKAGLIKLKPGVGENGINATPLDIIDNPRKLKLIEL 184 +PNGATI I NDPSN RALLLL + GLIKLK I+AT DI++NP+KLK L Sbjct: 120 DIPNGATIAIPNDPSNSGRALLLLARNGLIKLK---DNTNISATQKDIVENPKKLKFRAL 176 Query: 185 DAAQLPRSLDDLAAASINNDYAYKAGLSLQKDTIAVEDPRGRYANIIATRVQDKDQPWVK 244 +AA LPR L+ + A IN +YA +A L+ KD++ +ED YAN++ R +KD P +K Sbjct: 177 EAATLPRVLNQVDVALINTNYALEAKLNPVKDSLFIEDANSPYANLLVAREDNKDSPAIK 236 Query: 245 KLVQAYHSEEVRKFIETEFKGSLVPAF 271 KL A +S +V+KFIE +++G++VPAF Sbjct: 237 KLAAALNSPDVKKFIEEKYQGAIVPAF 263 >gi|300311637|ref|YP_003775729.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 268 Score = 161 bits (407), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 101/241 (41%), Positives = 135/241 (56%), Gaps = 9/241 (3%) Query: 27 AQEKHKIKVGISVGSAEAIFEVVKKVAARDGLEIQTVVFSDYLQPNAALAAGDLDANAFQ 86 AQ K+++G+ G+ V K A R G+++Q V F+D+ PN AL AGDLD N FQ Sbjct: 19 AQAADKLRIGVVPGAYGDSVAVAAKEAKRQGIDVQVVEFTDWTTPNVALDAGDLDLNYFQ 78 Query: 87 HRPYLESQIAARGYKIVPVGLTITAPLGIYSRKFKSVDQLPNGATIGIQNDPSNGNRALL 146 H+P+L++ I GYK+ G I + +G+YS K+KS+ LP GA +GI NDP N RALL Sbjct: 79 HQPFLDNAIQKNGYKLASAGTGILSNVGLYSLKYKSLTALPQGAKVGIANDPVNQGRALL 138 Query: 147 LLQKAGLIKLKPGVGENGINATPLDIIDNPRKLKLIELDAAQLPRSLDDLAAASINNDYA 206 LLQ GLIKLKP VG G + DIIDNPRKL +E++ QL R D+ A + Sbjct: 139 LLQNVGLIKLKPKVGYLG---SIDDIIDNPRKLSFVEVEGPQLVRITPDVDLAQGYPHFI 195 Query: 207 YKAGLSLQKDTIA---VEDPRGRYANIIATRVQDKDQPWVKKLVQAY-HSEEVRKFIETE 262 A +A +ED R+A TR + P V+K +Q Y +S VR I Sbjct: 196 VAAKAFDPSSGLAYSGIED--ARFAIQFVTRANRVNDPVVQKFIQIYQNSAAVRADIGRA 253 Query: 263 F 263 F Sbjct: 254 F 254 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.134 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 687,205 Number of extensions: 25099 Number of successful extensions: 106 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 99 Number of HSP's successfully gapped: 5 Length of query: 271 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 187 Effective length of database: 1,222,130 Effective search space: 228538310 Effective search space used: 228538310 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)