BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1649.p
         (152 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311118|ref|YP_003775210.1| DNA-binding repressor transcrip...   224   3e-60
gi|300310215|ref|YP_003774307.1| DNA-binding repressor transcrip...    57   6e-10

>gi|300311118|ref|YP_003775210.1| DNA-binding repressor
           transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 171

 Score =  224 bits (571), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 105/141 (74%), Positives = 122/141 (86%)

Query: 1   MSSNKSEFLTILGDRLAEERGRCGHTQKSVADQLEITARTQIKYEIGETAPDAYYLHGLG 60
           MSSNKSE+LT LGDRLA+ER RCGHTQKS+AD L+ITARTQIKYEIGETAPDAYYLHGL 
Sbjct: 1   MSSNKSEYLTTLGDRLAKERSRCGHTQKSIADNLDITARTQIKYEIGETAPDAYYLHGLD 60

Query: 61  EIGIDVTYVLTGVRGATPSLEESELLSCFRAVDAGMRSALVQLLTGLSQMSKAAKKKRDF 120
            IGIDVTYVLTGVRGATPS EES+L++C+R+VD   RSAL QLL G++ M +A++KKRDF
Sbjct: 61  AIGIDVTYVLTGVRGATPSPEESQLIACYRSVDKATRSALTQLLAGMADMVRASRKKRDF 120

Query: 121 PAASDAKRTRPGRQRKVPVGQ 141
            A  +  R RPGRQRK+PVG+
Sbjct: 121 FAVPEEVRVRPGRQRKLPVGR 141


>gi|300310215|ref|YP_003774307.1| DNA-binding repressor
          transcription regulator protein [Herbaspirillum
          seropedicae SmR1]
          Length = 145

 Score = 57.0 bits (136), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 52/86 (60%), Gaps = 1/86 (1%)

Query: 9  LTILGDRLAEERGRCGHTQKSVADQLEITARTQIKYEIGETAPDAYYLHGLGEIGIDVTY 68
          ++  G+RL  ER R G +Q++ A    +  + QI YE G+T PD  ++  + +IG+DV+Y
Sbjct: 3  ISPFGERLKSERLRLGFSQEAFAAVGGVRKQAQISYEQGKTLPDIGFMAAVSKIGVDVSY 62

Query: 69 VLTGVRGATP-SLEESELLSCFRAVD 93
          V+ G+  A   + +E ++L  FR +D
Sbjct: 63 VIFGIPTADALTSDEQQVLQGFRRLD 88


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.132    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 451,416
Number of extensions: 16501
Number of successful extensions: 49
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 2
Length of query: 152
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 75
Effective length of database: 1,255,275
Effective search space: 94145625
Effective search space used: 94145625
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 126 (53.1 bits)