BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1648.p
         (268 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311117|ref|YP_003775209.1| alpha/beta hydrolase superfamil...   308   3e-85

>gi|300311117|ref|YP_003775209.1| alpha/beta hydrolase superfamily
           protein [Herbaspirillum seropedicae SmR1]
          Length = 263

 Score =  308 bits (789), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 161/262 (61%), Positives = 200/262 (76%)

Query: 1   MSGQQNVHIDVDGVSLHACLWGQQLAGRPAIVLLHDSLGSVALWRDFPARLVERTACPVI 60
           MS  ++  I+V  VSLHA  WG+     PAIVLLHDSLG+V+LWRDFP +L ++T   V+
Sbjct: 1   MSEARHHRIEVGAVSLHASSWGRLDGELPAIVLLHDSLGAVSLWRDFPFQLSQQTGRAVV 60

Query: 61  AYDRHGFGLSSARSDRLPLGFIEGEARPWLEAILQHFGVKRVVLFGHSVGGGMAVSAAAQ 120
           AYDR+GFG SSAR DRL  GFI  EARPWL  +LQ  G+ + VL GHSVGGGMA++AAA+
Sbjct: 61  AYDRYGFGQSSARQDRLAPGFIAEEARPWLLTVLQQLGLTQAVLLGHSVGGGMAIAAAAE 120

Query: 121 MPQYVLGVITEAAQAFVEELTLRGIGEAAARFADPEQLVRLAKYHGNDMQQARWVLSAWI 180
           +P+ V+ VITE+AQAFVE+ TL+GI +A  +FA+P+QL RLA++HG D  +A+WVL AW 
Sbjct: 121 LPEQVVAVITESAQAFVEDRTLQGIRKAREQFANPDQLARLARHHGQDQDKAQWVLEAWT 180

Query: 181 DTWRSPAFADWSLAPMLARLQCPVLALHGDLDEYGSLAHPRMIASLPAAFSGQGRYQVLA 240
           +TW +P FA WSL P LARL CPVLA+HGD DEYGSLAHP  IA+ P AF GQGR  +L+
Sbjct: 181 ETWLAPEFAAWSLTPALARLHCPVLAIHGDEDEYGSLAHPHRIATQPQAFPGQGRSLILS 240

Query: 241 QCGHVPHREQPQQVLQATADFL 262
            CGHVPHREQP  VL+A  +FL
Sbjct: 241 GCGHVPHREQPDAVLRAVVEFL 262


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.138    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 896,789
Number of extensions: 37551
Number of successful extensions: 156
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 184
Effective length of database: 1,222,130
Effective search space: 224871920
Effective search space used: 224871920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)