BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1647.p (242 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311116|ref|YP_003775208.1| branched-chain amino acid ABC t... 481 e-137 gi|300310684|ref|YP_003774776.1| amino acid ABC transporter ATPa... 239 2e-64 gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC t... 236 2e-63 gi|300309522|ref|YP_003773614.1| branched-chain amino acid ABC t... 236 2e-63 gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC t... 234 4e-63 >gi|300311116|ref|YP_003775208.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 481 bits (1237), Expect = e-137, Method: Compositional matrix adjust. Identities = 238/242 (98%), Positives = 240/242 (99%) Query: 1 MLTISNLHAAYGKVEVLHGISMDVPKGKVVTLIGSNGAGKTTTMRAISGMIKPKGGEVTL 60 MLTISNLHAAYGKVEVLHGISM+VPKGKVVTLIGSNGAGKTTTMRAISGMIKPKGGEVTL Sbjct: 1 MLTISNLHAAYGKVEVLHGISMEVPKGKVVTLIGSNGAGKTTTMRAISGMIKPKGGEVTL 60 Query: 61 GGKNITGLDSHKIARFGLAHSPEGRRVFATMSVIDNLLLGAFPRFTRARPKGDIAHDLER 120 GGKNITGLDSHKIARFGLAHSPEGRRVFATMSV DNLLLGAFPRFTRARPKGDIAHDLER Sbjct: 61 GGKNITGLDSHKIARFGLAHSPEGRRVFATMSVTDNLLLGAFPRFTRARPKGDIAHDLER 120 Query: 121 ALELFPRLKERQAQLAGTLSGGEQQMLAMARAVMLNPEVILLDEPSMGLAPILVDEVFRI 180 ALELFPRLKERQ+QLAGTLSGGEQQMLAMARAVMLNPEVILLDEPSMGLAPILVDEVFRI Sbjct: 121 ALELFPRLKERQSQLAGTLSGGEQQMLAMARAVMLNPEVILLDEPSMGLAPILVDEVFRI 180 Query: 181 ISRLKEQGVTMLLVEQFAAAALNVADYGYVLENGKISVHGPADKLQNDPAVKAAYLGGGA 240 I RLKEQGVTMLLVEQFAAAALNVADYGYVLENGKISVHGPADKLQNDPAVKAAYLGGGA Sbjct: 181 IVRLKEQGVTMLLVEQFAAAALNVADYGYVLENGKISVHGPADKLQNDPAVKAAYLGGGA 240 Query: 241 HH 242 HH Sbjct: 241 HH 242 >gi|300310684|ref|YP_003774776.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 249 Score = 239 bits (610), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 127/242 (52%), Positives = 169/242 (69%), Gaps = 3/242 (1%) Query: 1 MLTISNLHAAYGKVEVLHGISMDVPKGKVVTLIGSNGAGKTTTMRAISGMIKPKGGEVTL 60 +L + +L AAYGKVEVL GI + V +GK+VT+IG NGAGKTT + AI G++ P G + Sbjct: 5 VLEVRDLSAAYGKVEVLAGIDLSVEQGKIVTVIGPNGAGKTTLLSAIMGVL-PSRGAMAF 63 Query: 61 GGKNITGLDSHKIARFGLAHSPEGRRVFATMSVIDNLLLGAFPRFTRARPKGDIAHDLER 120 G + ++ G+ PE R +FA M++ DNL+LGAF R+ + D A LE Sbjct: 64 DGAIRHSPEVEEMVAAGMTLVPEKRELFAEMNIEDNLMLGAFQRYRTG--QRDHAATLEE 121 Query: 121 ALELFPRLKERQAQLAGTLSGGEQQMLAMARAVMLNPEVILLDEPSMGLAPILVDEVFRI 180 LFPRL+ER++Q AGTLSGGE+QMLA+ RA+M P +++LDEPS+GLAP++V E+FRI Sbjct: 122 VYTLFPRLRERRSQQAGTLSGGERQMLAVGRALMAKPRLLMLDEPSLGLAPLIVREIFRI 181 Query: 181 ISRLKEQGVTMLLVEQFAAAALNVADYGYVLENGKISVHGPADKLQNDPAVKAAYLGGGA 240 I+ L+ +GV++LLVEQ A AAL VADYGYVLENG I +HGPA +L +D V AYLG Sbjct: 182 IAELRRRGVSILLVEQNARAALQVADYGYVLENGAIRMHGPASQLAHDRRVIEAYLGLSG 241 Query: 241 HH 242 H Sbjct: 242 KH 243 >gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 241 Score = 236 bits (601), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 121/241 (50%), Positives = 173/241 (71%), Gaps = 6/241 (2%) Query: 1 MLTISNLHAAYGKVEVLHGISMDVPKGKVVTLIGSNGAGKTTTMRAISGMIKPK--GGEV 58 +L + L AYG ++ + GI ++V +G++VTLIG+NGAGKTTT++AI+G + G + Sbjct: 5 ILKVQQLSVAYGGIQAVKGIDLEVNEGELVTLIGANGAGKTTTLKAITGTLPASRVEGHI 64 Query: 59 TLGGKNITGLDSHKIARFGLAHSPEGRRVFATMSVIDNLLLGAFPRFTRARPKGDIAHDL 118 G+ + G S ++ + LA PEGR VF MS+ +NLL+GA+ + KG IA D+ Sbjct: 65 EYLGQPLKGKKSFELVKDKLAMVPEGRGVFTRMSIQENLLMGAYT----SDDKGQIAADI 120 Query: 119 ERALELFPRLKERQAQLAGTLSGGEQQMLAMARAVMLNPEVILLDEPSMGLAPILVDEVF 178 ++ +FPRLKER AQ+AGTLSGGEQQMLAMARA+M +P+++LLDEPSMGL+PI+V+++F Sbjct: 121 DKWFAVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPKLLLLDEPSMGLSPIMVEKIF 180 Query: 179 RIISRLKEQGVTMLLVEQFAAAALNVADYGYVLENGKISVHGPADKLQNDPAVKAAYLGG 238 +I + QG+T+LLVEQ A AL A GYV+E+G I++ G A ++ +DP VKAAYLG Sbjct: 181 EVIRNVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMQGQAQQMLDDPRVKAAYLGE 240 Query: 239 G 239 G Sbjct: 241 G 241 >gi|300309522|ref|YP_003773614.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 241 Score = 236 bits (601), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 121/241 (50%), Positives = 173/241 (71%), Gaps = 6/241 (2%) Query: 1 MLTISNLHAAYGKVEVLHGISMDVPKGKVVTLIGSNGAGKTTTMRAISGMIKPK--GGEV 58 +L + L AYG ++ + GI ++V +G++VTLIG+NGAGKTTT++AI+G + G + Sbjct: 5 ILKVQQLSVAYGGIQAVKGIDLEVNEGELVTLIGANGAGKTTTLKAITGTLPASRVEGHI 64 Query: 59 TLGGKNITGLDSHKIARFGLAHSPEGRRVFATMSVIDNLLLGAFPRFTRARPKGDIAHDL 118 G+ + G S ++ + LA PEGR VF MS+ +NLL+GA+ + KG IA D+ Sbjct: 65 EYLGQPLKGKKSFELVKDKLAMVPEGRGVFTRMSIQENLLMGAYT----SDDKGQIAADI 120 Query: 119 ERALELFPRLKERQAQLAGTLSGGEQQMLAMARAVMLNPEVILLDEPSMGLAPILVDEVF 178 ++ +FPRLKER AQ+AGTLSGGEQQMLAMARA+M +P+++LLDEPSMGL+PI+V+++F Sbjct: 121 DKWFAVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPKLLLLDEPSMGLSPIMVEKIF 180 Query: 179 RIISRLKEQGVTMLLVEQFAAAALNVADYGYVLENGKISVHGPADKLQNDPAVKAAYLGG 238 +I + QG+T+LLVEQ A AL A GYV+E+G I++ G A ++ +DP VKAAYLG Sbjct: 181 EVIRNVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMQGQAQQMLDDPRVKAAYLGE 240 Query: 239 G 239 G Sbjct: 241 G 241 >gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 235 Score = 234 bits (598), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 121/239 (50%), Positives = 163/239 (68%), Gaps = 5/239 (2%) Query: 1 MLTISNLHAAYGKVEVLHGISMDVPKGKVVTLIGSNGAGKTTTMRAISGMIKPKGGEVTL 60 ML +H YG +E LHG+S++V KG++VTLIG+NGAGKTT + + G + G V Sbjct: 2 MLQFDKVHTHYGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGRPRASSGRVIF 61 Query: 61 GGKNITGLDSHKIARFGLAHSPEGRRVFATMSVIDNLLLGAFPRFTRARPKGDIAHDLER 120 G++IT L +H+I R GLA SPEGRRVF +++V++NL +GAF A +G +E Sbjct: 62 EGQDITQLQTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASNEAIEQG-----IEY 116 Query: 121 ALELFPRLKERQAQLAGTLSGGEQQMLAMARAVMLNPEVILLDEPSMGLAPILVDEVFRI 180 LFPRLKER AQ AGT+SGGEQQMLA+ RA+M P ++LLDEP++GLAP+++ ++F I Sbjct: 117 VFGLFPRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFDI 176 Query: 181 ISRLKEQGVTMLLVEQFAAAALNVADYGYVLENGKISVHGPADKLQNDPAVKAAYLGGG 239 I ++E GVT+ LVEQ A AL VAD GYVLENG + + L + V+ AYLG G Sbjct: 177 IRTIRESGVTVFLVEQNANKALGVADRGYVLENGHVVMSDTGANLLANSDVRKAYLGHG 235 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.137 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 794,668 Number of extensions: 34630 Number of successful extensions: 500 Number of sequences better than 1.0e-08: 124 Number of HSP's gapped: 336 Number of HSP's successfully gapped: 137 Length of query: 242 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 159 Effective length of database: 1,226,865 Effective search space: 195071535 Effective search space used: 195071535 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)