BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1635.p
         (219 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311104|ref|YP_003775196.1| transmembrane NADH dehydrogenas...   380   e-107

>gi|300311104|ref|YP_003775196.1| transmembrane NADH dehydrogenase I
           subunit J [Herbaspirillum seropedicae SmR1]
          Length = 219

 Score =  380 bits (977), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 206/219 (94%), Positives = 214/219 (97%)

Query: 1   MEFKTVLFYAFSVILVIAALRVITARNPVHAALFLVLSFFSAAGLWMLLKAEFLAIVLVL 60
           MEFKTVLFY F+VILVIAA+RVITARNPVHAALFLVLSFFSAAG+WMLLKAEFLAIVLVL
Sbjct: 1   MEFKTVLFYVFAVILVIAAVRVITARNPVHAALFLVLSFFSAAGIWMLLKAEFLAIVLVL 60

Query: 61  VYVGAVMVLFLFVVMMLDINMDKLREGFWGYFPLAATIGVIIVLEMAAVLLRSFWVSESQ 120
           VYVGAVMVLFLFVVMMLDINMDKLREGFWGYFPLAATIGVIIVLEMAAVLLRSFW  E+Q
Sbjct: 61  VYVGAVMVLFLFVVMMLDINMDKLREGFWGYFPLAATIGVIIVLEMAAVLLRSFWTPETQ 120

Query: 121 VPAASDTIGQTKPLGKLIFTEYVYGFEIAAVILLVAIVAAVALTLRRRKDSKYFDPAQAV 180
           VPAASDT+GQTKPLGKLIFTEYVY FEIAAVILLVAIVAAVALTLR+RKDSKYFDPA+AV
Sbjct: 121 VPAASDTLGQTKPLGKLIFTEYVYAFEIAAVILLVAIVAAVALTLRKRKDSKYFDPAKAV 180

Query: 181 KVKAADRVRLVSMKAESTRNEQPADAAAAADKPAAGQQS 219
           KVKA+DRVRLVSMKAESTRNE PADAAAAADKPAAGQQS
Sbjct: 181 KVKASDRVRLVSMKAESTRNEPPADAAAAADKPAAGQQS 219


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.138    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 434,334
Number of extensions: 11863
Number of successful extensions: 84
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 137
Effective length of database: 1,231,600
Effective search space: 168729200
Effective search space used: 168729200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 128 (53.9 bits)