BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1621.p
         (217 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311091|ref|YP_003775183.1| allophanate hydrolase subunit 1...   383   e-108
gi|300313400|ref|YP_003777492.1| allophanate hydrolase subunit 1...    61   6e-11

>gi|300311091|ref|YP_003775183.1| allophanate hydrolase subunit 1
           [Herbaspirillum seropedicae SmR1]
          Length = 216

 Score =  383 bits (984), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 187/214 (87%), Positives = 200/214 (93%)

Query: 4   PHLHPLGDRALLCSLPAPATLPQQQRIWALAELAGSWDEVSEVVPGMNNLTLITKRPVLD 63
           P LHPLGDRALLCSLPAPATLPQQQRIWALAELAG W+EVSEVVPGMNNLTLIT RPV+D
Sbjct: 3   PQLHPLGDRALLCSLPAPATLPQQQRIWALAELAGQWEEVSEVVPGMNNLTLITTRPVVD 62

Query: 64  LDSLAQRITKTWPKLSGERSTGRTVEIPVVYGGAAGPDLEHVARHTGLSVDEVIERHSGA 123
           L+ LA RI  TWPKLSGERS GRTVEIPVVYGG+AGPDL++VARHTGLS +EVI RHS A
Sbjct: 63  LEILAHRIETTWPKLSGERSVGRTVEIPVVYGGSAGPDLDNVARHTGLSTEEVIARHSNA 122

Query: 124 DYVVYFIGFLPGFAYLGGLDASLATPRHTTPRVSIPAGSVGIGGEQTGIYPMASPGGWQL 183
           +YVVYF+GFLPGFAY+GGLDASLATPRHTTPRVSIPAGSVGIGGEQTG+YPMASPGGWQL
Sbjct: 123 EYVVYFLGFLPGFAYMGGLDASLATPRHTTPRVSIPAGSVGIGGEQTGVYPMASPGGWQL 182

Query: 184 IGRTSLCLFNPDQEAPTLLRPGDRVRFTVERVAS 217
           IGRT+L LF+P QE PTLLRPGDRVRFTVERVAS
Sbjct: 183 IGRTTLQLFDPSQEPPTLLRPGDRVRFTVERVAS 216


>gi|300313400|ref|YP_003777492.1| allophanate hydrolase subunit 1
           [Herbaspirillum seropedicae SmR1]
          Length = 299

 Score = 61.2 bits (147), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 71/162 (43%), Gaps = 27/162 (16%)

Query: 82  RSTGRTVEIPVVYGGA----------------AGPDLEHVARHTGLS-VDEVIERHSGAD 124
           R   R +E+PV+Y                   +  DL++ AR  G       I  HSG  
Sbjct: 93  RIDTRIIEVPVLYDDPWTNETQSRFRDRHQDPSSTDLQYAARINGYDETQAFIAAHSGTP 152

Query: 125 YVVYFIGFLPGFAYLGGL---DASLATPRHTTPRVSIPAGSVGIGGEQTGIYPMASPGGW 181
           + V  +GF+ G  ++  +   D  L  P++  PR   P  ++G GG    IY +   GG+
Sbjct: 153 WFVSMVGFVAGLPFMYQMVEQDRQLQVPKYLRPRTDTPKLTLGHGGCFGCIYSVRGAGGY 212

Query: 182 QLIGRTSLCLFNPDQ------EAPTLLRPGDRVRFT-VERVA 216
           Q+ G T   +++P Q      E+    R GD V+F  ++R A
Sbjct: 213 QMFGVTPAPIYDPQQGLPYLRESMVFFRAGDIVQFKPIDRTA 254


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.138    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 846,441
Number of extensions: 39814
Number of successful extensions: 110
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 3
Length of query: 217
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 136
Effective length of database: 1,236,335
Effective search space: 168141560
Effective search space used: 168141560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)