BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1616.p
         (334 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311086|ref|YP_003775178.1| hypothetical protein Hsero_1757...   550   e-158

>gi|300311086|ref|YP_003775178.1| hypothetical protein Hsero_1757
           [Herbaspirillum seropedicae SmR1]
          Length = 334

 Score =  550 bits (1418), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 260/334 (77%), Positives = 291/334 (87%)

Query: 1   MQLTIERAEAFARMPLTYLRQEYPNHIMHLLNGPEDVLSPRAMHPVFYGCYDWHSAVHGY 60
           MQLT+ERAE FARMPL YLRQEYPNHIMH+LN   DVLSPRAMHPVFYGCYDWHSAVHG+
Sbjct: 1   MQLTLERAEEFARMPLAYLRQEYPNHIMHVLNDAGDVLSPRAMHPVFYGCYDWHSAVHGF 60

Query: 61  WLLLRCLRLYPGLPAADEITALFDEHFTPDLMERETDYFRAPNRAPFERPYGFAWLLALD 120
           WLLLRC++ YP LPA  E+ A+FDEHFTP+LMERETDYFR   RA FERPYGF W+LALD
Sbjct: 61  WLLLRCVQRYPELPARAEVEAIFDEHFTPELMERETDYFRVGGRASFERPYGFGWILALD 120

Query: 121 QELLVSAHPQARQWHTAMQPLTTEIRRRLLDYLSKLSYPIRVGAHFNTAFSLALSLDYAH 180
           QEL  S  P+A  W TAMQPLT EIRRRLL+YLSKLSYPIRVG H+NTAF+LALSLD A 
Sbjct: 121 QELAQSTLPRAASWRTAMQPLTLEIRRRLLEYLSKLSYPIRVGTHYNTAFALALSLDQAR 180

Query: 181 HVQDSELESVIIDWSQRHYGADTDYPAQYEPGGDEFISGALTEALLMSKVMNAEVFPVWF 240
           HV+D ELE VI+  +QR+YG DTDYPA YEPGGDE+ISGALTEALLMSKV++A+ F  WF
Sbjct: 181 HVKDIELEQVILASAQRYYGKDTDYPAHYEPGGDEYISGALTEALLMSKVLSAQAFAAWF 240

Query: 241 DQYLPRVAEVAQLMQPAHVSDPTDPKVAHLDGLNLSRAWCMKQVLRHLSTQHPARAALEA 300
           DQYLPRVAE+ Q+MQPA VSDPTDPK+AHLDGLNLSRAWCMK VLRHL   H AR+A+EA
Sbjct: 241 DQYLPRVAEIEQIMQPALVSDPTDPKIAHLDGLNLSRAWCMKTVLRHLPAGHAARSAIEA 300

Query: 301 SAQRHIAASLDQVIGSHYSGGHWLATFAVLALED 334
           + QRHIAAS+DQV+GSHYSGGHWLA+FA+LALED
Sbjct: 301 AIQRHIAASIDQVVGSHYSGGHWLASFAMLALED 334


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.136    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,060,998
Number of extensions: 41776
Number of successful extensions: 120
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 248
Effective length of database: 1,212,660
Effective search space: 300739680
Effective search space used: 300739680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 131 (55.1 bits)