BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1615.p
         (430 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311085|ref|YP_003775177.1| NADH dehydrogenase [Herbaspiril...   793   0.0  

>gi|300311085|ref|YP_003775177.1| NADH dehydrogenase [Herbaspirillum
           seropedicae SmR1]
          Length = 430

 Score =  793 bits (2049), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/430 (88%), Positives = 403/430 (93%)

Query: 1   MPHVIIIGCGFGGLAAARELANAEVRITMIDRSNHHLFQPLLYQVATAGLSAPAISAPIR 60
           MPHV+IIGCGFGGLAAARELANAEVRITMIDRSNHHLFQPLLYQVATAGLSAPAISAPIR
Sbjct: 1   MPHVVIIGCGFGGLAAARELANAEVRITMIDRSNHHLFQPLLYQVATAGLSAPAISAPIR 60

Query: 61  AILAQQRNLTTLMAAVTEIDTAGKSVTLEDGSVLGYDYLIVAAGSTHSYFGRDEWSELAP 120
           AILA QRNLTTLMAAVT IDTA K+V LEDGS + YD+LIVAAGSTHSYFGRDEWS LAP
Sbjct: 61  AILAHQRNLTTLMAAVTGIDTAAKTVQLEDGSTMAYDHLIVAAGSTHSYFGRDEWSSLAP 120

Query: 121 GLKTLEDAFEIRKRILMAFEHAERETDARRRQEWLTFTVIGGGATGVEMAGTLVEIARHT 180
           GLKTLEDAFEIRKRILMAFE AERE+DARRRQEWLTFTVIGGGATGVEMAGTLVEIARHT
Sbjct: 121 GLKTLEDAFEIRKRILMAFERAERESDARRRQEWLTFTVIGGGATGVEMAGTLVEIARHT 180

Query: 181 LSGEFRNIDPHSARVVLVEGSERVLGAYPEDLSEKAREQLHKLGVDVRTGCRVVHIDETC 240
           L+GEFRNIDPHSARVVL+EGS+R+LGAYP DLS+KAREQL KLGVDVRTG RVVHIDETC
Sbjct: 181 LAGEFRNIDPHSARVVLIEGSDRILGAYPPDLSDKAREQLQKLGVDVRTGSRVVHIDETC 240

Query: 241 VRYANFDGEQSLATRTVIWSAGVAASPLGKKLGVPVDRAGRVPVTPTLCIGGHEEVFVIG 300
           VRY NFDGEQ+L+TRTVIWSAGVAASPLG+ LGV +DRAGRVPV+P L I GH++V+VIG
Sbjct: 241 VRYTNFDGEQTLSTRTVIWSAGVAASPLGRALGVELDRAGRVPVSPELNIAGHDDVYVIG 300

Query: 301 DLAAAQSEGKPVPGVSPAAKQMGRVAARNIKHHIAGQAAETFVYKDYGSLATIGRRAAIA 360
           DLAAAQSEGKPVPGVSPAAKQMGRVAARNIKH IAGQ  ETFVY+DYGSLATIGR+AAIA
Sbjct: 301 DLAAAQSEGKPVPGVSPAAKQMGRVAARNIKHRIAGQTPETFVYQDYGSLATIGRKAAIA 360

Query: 361 MVGKLKFSGYPAWLFWLFVHVYFLIGFRNRIMVMADWAWAYFTFKRSARVISTTMPTSLE 420
           MVGKLKFSGYPAWLFWLFVHVYFLIGFRNRIMVMADWAWAYFTFKRSARVIS TMPT  E
Sbjct: 361 MVGKLKFSGYPAWLFWLFVHVYFLIGFRNRIMVMADWAWAYFTFKRSARVISATMPTQAE 420

Query: 421 QVPANKEVAQ 430
           Q P  KE A+
Sbjct: 421 QSPLRKEAAE 430


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,362,220
Number of extensions: 58969
Number of successful extensions: 220
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 220
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 342
Effective length of database: 1,203,190
Effective search space: 411490980
Effective search space used: 411490980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)