BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1612.p
         (174 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311082|ref|YP_003775174.1| transmembrane protein [Herbaspi...   298   1e-82
gi|300312390|ref|YP_003776482.1| lipoprotein [Herbaspirillum ser...    59   2e-10

>gi|300311082|ref|YP_003775174.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 177

 Score =  298 bits (764), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 154/171 (90%), Positives = 158/171 (92%), Gaps = 3/171 (1%)

Query: 7   LFQRIRPRLAAALLAAASLA---GCASLLQPPVQPGEPEDQVVARLGPPTNVYPDGNVRV 63
           L Q  RPRLAAALLA ++L    GCASLLQPPVQPGEPEDQVVARLGPPTNVYPDGNVRV
Sbjct: 7   LLQSTRPRLAAALLALSALCALSGCASLLQPPVQPGEPEDQVVARLGPPTNVYPDGNVRV 66

Query: 64  FEYAAGAFGQYQYLARIGPDHRLISYAQVWTIENFRAIRPKQDTKLDVLRRVGRPTEVTR 123
           FEY AG F QYQY+ARIGPDHRLISY QVWTIENFRAIRPKQDTKLDVLRRVGRPTEVTR
Sbjct: 67  FEYGAGPFSQYQYMARIGPDHRLISYEQVWTIENFRAIRPKQDTKLDVLRRVGRPTEVTR 126

Query: 124 YARIPFEAWNYGYKESGVWNSQMTVYFNDQGIVEKVENGPDPRFDDSRFRF 174
           YARIPFEAWNYGYKESGVWNSQMTVYF DQGIVEKVENGPDPR+DDSRFRF
Sbjct: 127 YARIPFEAWNYGYKESGVWNSQMTVYFTDQGIVEKVENGPDPRYDDSRFRF 177


>gi|300312390|ref|YP_003776482.1| lipoprotein [Herbaspirillum
           seropedicae SmR1]
          Length = 175

 Score = 58.9 bits (141), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 61/141 (43%), Gaps = 12/141 (8%)

Query: 7   LFQRIRPRLA--AALLAAASLAGCASLLQP-------PVQPG-EPEDQVVARLGPPTNVY 56
            F R+R       A L A ++ GC    +P        +Q G   E  V   +G P  V+
Sbjct: 5   FFTRLRRHAGKFGAFLVALAMLGCDRNGKPIEEFGLDKLQKGISSEADVRDVMGQPDTVW 64

Query: 57  PDG-NVRVFEYAAGAFGQYQYLARIGPDHRLISYAQVWTIENFRAIRPKQDTKLDVLRRV 115
            DG   R  EY  G  G   ++  IG    LI Y QV T E+F  IR    T   + R+ 
Sbjct: 65  DDGQGARTLEYPKGPQGIRTWMFSIGASGTLIDYQQVLTQEHFDTIRAGM-TAEQIRRQF 123

Query: 116 GRPTEVTRYARIPFEAWNYGY 136
           GRP  V ++ R   E W++ Y
Sbjct: 124 GRPRSVVQFGRKNEEVWDWKY 144


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 576,737
Number of extensions: 23307
Number of successful extensions: 33
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 2
Length of query: 174
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 95
Effective length of database: 1,245,805
Effective search space: 118351475
Effective search space used: 118351475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)