BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1607.p
         (430 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311077|ref|YP_003775169.1| D-serine deaminase [Herbaspiril...   805   0.0  

>gi|300311077|ref|YP_003775169.1| D-serine deaminase [Herbaspirillum
           seropedicae SmR1]
          Length = 430

 Score =  805 bits (2079), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/430 (90%), Positives = 405/430 (94%)

Query: 1   MNDTNYQVHFQAGMIDPLNKGLGPLEQPLAPQQAGRVRWNLLNEDVSLPAAVLYEEKIAH 60
           MNDTNYQ  ++AG+IDPLNKGLGPL Q L P QAG VRWNLLNED+SLPAAVLYEEKIAH
Sbjct: 1   MNDTNYQGAYEAGIIDPLNKGLGPLPQALPPGQAGTVRWNLLNEDISLPAAVLYEEKIAH 60

Query: 61  NLKWMQDFVGQYQVKLAPHGKTTMAPKLFARQLDTGAWGITLATAHQTLAAYHHGVRRVI 120
           NLKWMQ+FVGQYQ+KLAPHGKTTMAPKLFARQLDTGAWGITLATAHQTLA YHHGVRRVI
Sbjct: 61  NLKWMQEFVGQYQLKLAPHGKTTMAPKLFARQLDTGAWGITLATAHQTLAGYHHGVRRVI 120

Query: 121 MANQLVGKRNMAIISELLADPEFEFFCLVDSAELAEQLGAFFAERKQTLNVLLELGPAGG 180
           MANQLVGKRNMAIISELLADP FEFFCLVDSA L +QLG FFAERKQTLNVLLELGP GG
Sbjct: 121 MANQLVGKRNMAIISELLADPSFEFFCLVDSAALVDQLGRFFAERKQTLNVLLELGPTGG 180

Query: 181 RTGVRDAAQQTAVLDAIARWDSLALAGVEVYEGVLKEEVDIRRFLQRAVTCLKELAAQGQ 240
           RTGVRD AQQ AVL+AI+RWDS+ALAGVEVYEGVLKEEVDIRRFLQRAV CL++LAAQGQ
Sbjct: 181 RTGVRDEAQQQAVLEAISRWDSIALAGVEVYEGVLKEEVDIRRFLQRAVACLQDLAAQGQ 240

Query: 241 LAHRLARGPAVLTGAGSAWYDVVAEEFGQAEIGAALDVVLRPGCYLTHDVGIYRAAQAQI 300
           LA RLARGPAVLTGAGSAWYDVVAEEFGQA+IGAALDVVLRPGCYLTHDVGIYRAAQAQI
Sbjct: 241 LARRLARGPAVLTGAGSAWYDVVAEEFGQADIGAALDVVLRPGCYLTHDVGIYRAAQAQI 300

Query: 301 QVRNPVAHQMRSQLQPALQLWAYVQSIPEADKAIIALGKRDAAFDAGLPAPVTRFRPGHD 360
           QVRNPVAH MRSQLQPALQLWAYVQSIPE+DKAIIALGKRDAAFDAGLP PV+RFRPG D
Sbjct: 301 QVRNPVAHSMRSQLQPALQLWAYVQSIPESDKAIIALGKRDAAFDAGLPMPVSRFRPGRD 360

Query: 361 TQPQATPTHWEVTGMMDQHAYLKIAEGDDIRVGDMIAFDISHPCLTFDKWRHLVVVDQRF 420
           T PQATP HWEVTGMMDQHAYLKIA GDDI VGDMIAFDISHPCLTFDKWRHLVVVD RF
Sbjct: 361 TGPQATPAHWEVTGMMDQHAYLKIAAGDDIEVGDMIAFDISHPCLTFDKWRHLVVVDGRF 420

Query: 421 DVTDIVQTFF 430
           DVTDIVQTFF
Sbjct: 421 DVTDIVQTFF 430


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,458,834
Number of extensions: 64550
Number of successful extensions: 193
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 193
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 342
Effective length of database: 1,203,190
Effective search space: 411490980
Effective search space used: 411490980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)