BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1601.p
         (162 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311071|ref|YP_003775163.1| hypothetical protein Hsero_1742...   167   4e-43

>gi|300311071|ref|YP_003775163.1| hypothetical protein Hsero_1742
           [Herbaspirillum seropedicae SmR1]
          Length = 168

 Score =  167 bits (423), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 102/165 (61%), Positives = 126/165 (76%), Gaps = 3/165 (1%)

Query: 1   MNMAIDTSLTSIGSSDPYGLPAGIVPS--NPVKPTDNPEALAQAVALSTDASVIVTLGGG 58
           MNMAIDTS   +G+ DPYGLP     +  + VK  ++P A+AQAV L+  ASV+V+LGG 
Sbjct: 4   MNMAIDTSSIPLGNLDPYGLPGNSASAGNSAVKAVNDPAAVAQAVELAAQASVVVSLGGA 63

Query: 59  TASNAGLTYNAAGLFNSFVNAGTPV-TTPDSTQTEATQSYYQGVLGSISSSSPNSGIYDG 117
           ++ N  LTYNAAGLF++ V AG+    +PD TQ +ATQSYYQG+LGSI   S N G+YDG
Sbjct: 64  SSGNGALTYNAAGLFDAIVGAGSADGASPDLTQNQATQSYYQGILGSIVIPSSNDGVYDG 123

Query: 118 SGIFSGQSLSSPLSLMLKSNPDLTGSIVQDIVNQNVVGGLISTMA 162
           SG FSGQ+LSS LSL+LKSNPDLTG+IV+DIVNQ +VGGLIST A
Sbjct: 124 SGQFSGQALSSQLSLLLKSNPDLTGAIVEDIVNQGIVGGLISTTA 168


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.307    0.125    0.341 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 400,371
Number of extensions: 13936
Number of successful extensions: 53
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 1
Length of query: 162
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 84
Effective length of database: 1,250,540
Effective search space: 105045360
Effective search space used: 105045360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 127 (53.5 bits)