BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1600.p
         (286 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311070|ref|YP_003775162.1| CDP-diacylglycerol--serine O-ph...   538   e-154

>gi|300311070|ref|YP_003775162.1| CDP-diacylglycerol--serine
           O-phosphatidyltransferase [Herbaspirillum seropedicae
           SmR1]
          Length = 286

 Score =  538 bits (1387), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 273/286 (95%), Positives = 280/286 (97%)

Query: 1   MPTFRRRKAKPGIPFPKSLRKPKAAQLDDAGQVVTRRRSRGIYLLPNAFTTAALFCGFYA 60
           MPT RRRKAK GIPFPKSLRKPKAAQLD++GQVV RRRSRGIYLLPNAFTTAALFCGFYA
Sbjct: 1   MPTLRRRKAKTGIPFPKSLRKPKAAQLDESGQVVVRRRSRGIYLLPNAFTTAALFCGFYA 60

Query: 61  IVMAMNLKFDYASIAIFVAMVLDSLDGRVARMTNTQSEFGAQYDSLSDMVSFGAAPALVV 120
           IVMAMNLKFDYASIAIFVAMVLDSLDGRVARMTNTQSEFGAQYDSLSDMVSFGAAPALVV
Sbjct: 61  IVMAMNLKFDYASIAIFVAMVLDSLDGRVARMTNTQSEFGAQYDSLSDMVSFGAAPALVV 120

Query: 121 YEWSLRGMGKLGWLAAFVYCAGGALRLARFNTNIAVVDKRYFQGLPSPAAAALVAGFVWL 180
           YEWSLRGMGKLGWLAAFVYCAGGALRLARFNTNIAVVDKRYFQGLPSPAAAALVAGFVWL
Sbjct: 121 YEWSLRGMGKLGWLAAFVYCAGGALRLARFNTNIAVVDKRYFQGLPSPAAAALVAGFVWL 180

Query: 181 MDDLRFAGTDLSWYGWVITLYAGITMVTNVPFYSFKDVNFRKPVPFIAALLVVVALVLIS 240
           MDDLRFAGTDLSWY WVITLYAG+TMVTNVPFYSFKDVNFRKPVPFIAALLVVVALVLIS
Sbjct: 181 MDDLRFAGTDLSWYAWVITLYAGVTMVTNVPFYSFKDVNFRKPVPFIAALLVVVALVLIS 240

Query: 241 SDPSKVLFGLFVLYGLSGYAVYIWRRIKGKPVSIVQTEDEHGDAPH 286
           SDPSKVLFGLFVLYGLSGY VY+WRR+KGKPVSIVQT+DEHG+ PH
Sbjct: 241 SDPSKVLFGLFVLYGLSGYGVYLWRRLKGKPVSIVQTKDEHGEEPH 286


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.140    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 910,776
Number of extensions: 36134
Number of successful extensions: 131
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 202
Effective length of database: 1,222,130
Effective search space: 246870260
Effective search space used: 246870260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 130 (54.7 bits)