BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1597.p
         (270 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311067|ref|YP_003775159.1| hypothetical protein Hsero_1738...   395   e-111

>gi|300311067|ref|YP_003775159.1| hypothetical protein Hsero_1738
           [Herbaspirillum seropedicae SmR1]
          Length = 262

 Score =  395 bits (1016), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/270 (77%), Positives = 229/270 (84%), Gaps = 8/270 (2%)

Query: 1   MTPSRKLMLGALLATACVAAQAQTPAQQAPLPAPTSVPTTGTLVVIPANGEITVPNDQAH 60
           MTPSRKLMLGA+LATAC+AAQAQT       PAP  VPT+GT+VV+PANGEI+VPNDQA 
Sbjct: 1   MTPSRKLMLGAVLATACIAAQAQTAMTA---PAP--VPTSGTMVVVPANGEISVPNDQAR 55

Query: 61  VTLQVEEQDKDKAAAASRVNQKMKQGIELLKRQDPQAELKSYGYYTYAVYGEPPQVSGSP 120
           VTLQVEEQDKDKAAAASRVNQKMKQGIELLKRQDPQA LKSYGYYTYAVY EPPQV+   
Sbjct: 56  VTLQVEEQDKDKAAAASRVNQKMKQGIELLKRQDPQAALKSYGYYTYAVYAEPPQVTPQQ 115

Query: 121 ARVPPKARPVVAWRVGQYLEMNTQNLAALPRTVSAVQSVMNLTGLQFGLSPTAAKKLDAA 180
            R P KAR VV WRVGQYLEM T+NLAALP+TVS+ Q++M+L GLQFGLSP AAKKLDA 
Sbjct: 116 PRQPAKARQVVGWRVGQYLEMTTENLAALPKTVSSAQALMSLNGLQFGLSPAAAKKLDAT 175

Query: 181 LVNATYRNLEERIGFIASAMHRNATDAVIDTVDFEGSGNYVPSAVAAAPMAKSAMMRSDM 240
           LVNATYRNLEERIGFIA+AMHR  +DAVI+TVDFEGSGNY   A  A     +  MR+DM
Sbjct: 176 LVNATYRNLEERIGFIANAMHRAPSDAVIETVDFEGSGNY---AAPAPAPMMAKAMRADM 232

Query: 241 VQENASVAEPSFEPGESTVTMRLVGKVRFR 270
           VQE+ +VAEPSFEPGESTV MRLVGKVRF+
Sbjct: 233 VQESTTVAEPSFEPGESTVNMRLVGKVRFK 262


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.126    0.350 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 604,773
Number of extensions: 18494
Number of successful extensions: 62
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 186
Effective length of database: 1,222,130
Effective search space: 227316180
Effective search space used: 227316180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 130 (54.7 bits)