BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1596.p
         (338 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311066|ref|YP_003775158.1| ketol-acid reductoisomerase oxi...   694   0.0  
gi|300313100|ref|YP_003777192.1| ketol-acid reductoisomerase oxi...   688   0.0  

>gi|300311066|ref|YP_003775158.1| ketol-acid reductoisomerase
           oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 338

 Score =  694 bits (1790), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/338 (100%), Positives = 338/338 (100%)

Query: 1   MKVFYDKDADLSLIKNKNVTIIGYGSQGHAHALNLKDSGVKVTVGLRKGGASWNKAEQAG 60
           MKVFYDKDADLSLIKNKNVTIIGYGSQGHAHALNLKDSGVKVTVGLRKGGASWNKAEQAG
Sbjct: 1   MKVFYDKDADLSLIKNKNVTIIGYGSQGHAHALNLKDSGVKVTVGLRKGGASWNKAEQAG 60

Query: 61  LKVAEVNEAVKDADVIMILLPDENIGQVYAENVAPFAKQGATVAFAHGFNIHYGQVVPRA 120
           LKVAEVNEAVKDADVIMILLPDENIGQVYAENVAPFAKQGATVAFAHGFNIHYGQVVPRA
Sbjct: 61  LKVAEVNEAVKDADVIMILLPDENIGQVYAENVAPFAKQGATVAFAHGFNIHYGQVVPRA 120

Query: 121 DLDIIMIAPKAPGHTVRSTYSQGGGVPHLIAVHQDKSGSARDLALSYATANGGGRAGIIE 180
           DLDIIMIAPKAPGHTVRSTYSQGGGVPHLIAVHQDKSGSARDLALSYATANGGGRAGIIE
Sbjct: 121 DLDIIMIAPKAPGHTVRSTYSQGGGVPHLIAVHQDKSGSARDLALSYATANGGGRAGIIE 180

Query: 181 TNFREETETDLFGEQAVLCGGTVELIKAGFETLVEAGYAPEMAYFECLHELKLIVDLIYE 240
           TNFREETETDLFGEQAVLCGGTVELIKAGFETLVEAGYAPEMAYFECLHELKLIVDLIYE
Sbjct: 181 TNFREETETDLFGEQAVLCGGTVELIKAGFETLVEAGYAPEMAYFECLHELKLIVDLIYE 240

Query: 241 GGIANMNYSISNNAEYGEYVTGPRVINAESKAAMKKVLEDIQTGEYAKSFILENKAGAPT 300
           GGIANMNYSISNNAEYGEYVTGPRVINAESKAAMKKVLEDIQTGEYAKSFILENKAGAPT
Sbjct: 241 GGIANMNYSISNNAEYGEYVTGPRVINAESKAAMKKVLEDIQTGEYAKSFILENKAGAPT 300

Query: 301 LMSRRRINAEHQIEIVGEKLRAMMPWIKANKLVDQSKN 338
           LMSRRRINAEHQIEIVGEKLRAMMPWIKANKLVDQSKN
Sbjct: 301 LMSRRRINAEHQIEIVGEKLRAMMPWIKANKLVDQSKN 338


>gi|300313100|ref|YP_003777192.1| ketol-acid reductoisomerase
           oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 338

 Score =  688 bits (1776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/338 (98%), Positives = 338/338 (100%)

Query: 1   MKVFYDKDADLSLIKNKNVTIIGYGSQGHAHALNLKDSGVKVTVGLRKGGASWNKAEQAG 60
           MKVFYDKDADLSLIKNKNVTIIGYGSQGHAHALNLKDSGVKVTVGLR+GGASW+KAE+AG
Sbjct: 1   MKVFYDKDADLSLIKNKNVTIIGYGSQGHAHALNLKDSGVKVTVGLRRGGASWSKAEKAG 60

Query: 61  LKVAEVNEAVKDADVIMILLPDENIGQVYAENVAPFAKQGATVAFAHGFNIHYGQVVPRA 120
           LKVAEVN+AVKDADVIMILLPDENIGQVYAENVAPFAKQGATVAFAHGFNIHYGQVVPRA
Sbjct: 61  LKVAEVNDAVKDADVIMILLPDENIGQVYAENVAPFAKQGATVAFAHGFNIHYGQVVPRA 120

Query: 121 DLDIIMIAPKAPGHTVRSTYSQGGGVPHLIAVHQDKSGSARDLALSYATANGGGRAGIIE 180
           DLDIIMIAPKAPGHTVRSTYSQGGGVPHLIAVHQDKSGSARDLALSYATANGGGRAGIIE
Sbjct: 121 DLDIIMIAPKAPGHTVRSTYSQGGGVPHLIAVHQDKSGSARDLALSYATANGGGRAGIIE 180

Query: 181 TNFREETETDLFGEQAVLCGGTVELIKAGFETLVEAGYAPEMAYFECLHELKLIVDLIYE 240
           TNFREETETDLFGEQAVLCGGTVELIKAGFETLVEAGYAPEMAYFECLHELKLIVDLIYE
Sbjct: 181 TNFREETETDLFGEQAVLCGGTVELIKAGFETLVEAGYAPEMAYFECLHELKLIVDLIYE 240

Query: 241 GGIANMNYSISNNAEYGEYVTGPRVINAESKAAMKKVLEDIQTGEYAKSFILENKAGAPT 300
           GGIANMNYSISNNAEYGEYVTGPRVINAESKAAMKKVLEDIQTGEYAKSFILENKAGAPT
Sbjct: 241 GGIANMNYSISNNAEYGEYVTGPRVINAESKAAMKKVLEDIQTGEYAKSFILENKAGAPT 300

Query: 301 LMSRRRINAEHQIEIVGEKLRAMMPWIKANKLVDQSKN 338
           LMSRRRINAEHQIEIVGEKLRAMMPWIKANKLVDQSKN
Sbjct: 301 LMSRRRINAEHQIEIVGEKLRAMMPWIKANKLVDQSKN 338


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.133    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,063,946
Number of extensions: 44974
Number of successful extensions: 164
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 2
Length of query: 338
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 252
Effective length of database: 1,212,660
Effective search space: 305590320
Effective search space used: 305590320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)