BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1584.p
         (309 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311055|ref|YP_003775147.1| redox regulated molecular chape...   608   e-175

>gi|300311055|ref|YP_003775147.1| redox regulated molecular
           chaperone heat-shock-like protein [Herbaspirillum
           seropedicae SmR1]
          Length = 309

 Score =  608 bits (1569), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 296/309 (95%), Positives = 300/309 (97%)

Query: 1   MKDTLQKFLVDNAPVRGELVEISDTWRQVQARRDYPVAVRTLLGEMLAAAALLSANLKFN 60
           MKDTLQKFLVDNAPVRGELVEISDTWRQVQARRDYPVAVRTLLGEMLAA+ALLSANLKFN
Sbjct: 1   MKDTLQKFLVDNAPVRGELVEISDTWRQVQARRDYPVAVRTLLGEMLAASALLSANLKFN 60

Query: 61  GMIVMQIHGDGPVKLLVVECDSELQLRATAKLADDAAIAEDATLTDLVNAAGHGRFVITL 120
           GMIVMQIHGDGPVKLLVVECDSELQLRATAKLAD A IA+DATLTDLVNA GHGRFVITL
Sbjct: 61  GMIVMQIHGDGPVKLLVVECDSELQLRATAKLADGAEIADDATLTDLVNANGHGRFVITL 120

Query: 121 DPKDKLPGQQAYQGVVPLDGESVATVIENYMLRSEQLDTKLWLAADENVSRGLLLQKLPS 180
           DPKDKLPGQQAYQGVVPLDGESVATVIENYMLRSEQLDTKLWLAADENVSRGLLLQKLPS
Sbjct: 121 DPKDKLPGQQAYQGVVPLDGESVATVIENYMLRSEQLDTKLWLAADENVSRGLLLQKLPS 180

Query: 181 IGGTAARTAQPEGELEAWNHMVMLGDTLKREELLCTDIATLMHRLFWEQTIRVFDPVHPQ 240
           IGGTAA TA+PEGELE WNHMVMLGDTLKREELL TDIATLMHRLFWEQTIRVFDPVHPQ
Sbjct: 181 IGGTAAPTAKPEGELEDWNHMVMLGDTLKREELLSTDIATLMHRLFWEQTIRVFDPVHPQ 240

Query: 241 FHCSCSREKVGNMLKMLGQEEVAEALSQMEKLAIDCDFCGQHYEFDAVDCAQLFVADVGS 300
           FHCSCSREKVGNMLKMLGQEEVAEALSQMEKLAIDCDFCGQHYEFDAVDCAQLFVADVG 
Sbjct: 241 FHCSCSREKVGNMLKMLGQEEVAEALSQMEKLAIDCDFCGQHYEFDAVDCAQLFVADVGG 300

Query: 301 ASEASGARH 309
           A+EA  ARH
Sbjct: 301 ANEAGDARH 309


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 824,052
Number of extensions: 27977
Number of successful extensions: 83
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 224
Effective length of database: 1,217,395
Effective search space: 272696480
Effective search space used: 272696480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)