BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1578.p
         (251 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311050|ref|YP_003775142.1| esterase_lipase superfamily pro...   394   e-111
gi|300310635|ref|YP_003774727.1| 3-ketoadipate enol-lactone hydr...    76   3e-15

>gi|300311050|ref|YP_003775142.1| esterase_lipase superfamily
           protein [Herbaspirillum seropedicae SmR1]
          Length = 251

 Score =  394 bits (1013), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 209/251 (83%), Positives = 221/251 (88%)

Query: 1   MPFALSDNRKIHYQVEGNGPPLLLHHGFTSSLEAWRFFGFTAALREHYQVIMFDALGHGQ 60
           MPFA+SD RKIHYQVEG GPPLLLHHGFTSSLEAWRFFGFT  LR+HY+VI FDALGHGQ
Sbjct: 1   MPFAISDQRKIHYQVEGEGPPLLLHHGFTSSLEAWRFFGFTDVLRQHYRVISFDALGHGQ 60

Query: 61  SDKPHETVAYSQPQRCRDALAVLDALGIERAHFFGYSLGGWVGYGLVRHAPQRLHSLILG 120
           SDKPH++ AYSQ QRCRDALAVLDA  +ER HFFGYSLGGWVGYGLVR AP+RL SLILG
Sbjct: 61  SDKPHDSAAYSQHQRCRDALAVLDAAQVERTHFFGYSLGGWVGYGLVRQAPERLRSLILG 120

Query: 121 AAHPYEDRSWDGFHGIDGRDPEAFIATFESLLDERISPQVKMLIRANDLVALAAAAQQAR 180
           AAHPYEDRSW+ F GIDG DPEAFIA FE LLDE ISPQVKMLIR NDLVALAAAAQQAR
Sbjct: 121 AAHPYEDRSWEVFRGIDGTDPEAFIAAFEDLLDEAISPQVKMLIRGNDLVALAAAAQQAR 180

Query: 181 PSQEDLLAQMRLPCLLFCGDADARHAAVQRTASLLPQGEFVSLPGVTHFGGLMQSALVLP 240
           PSQE+LLA+M LPCL FCGDADARH AV RTA+ L + EFVSLPGVTHFGGLMQSALVLP
Sbjct: 181 PSQEELLARMDLPCLFFCGDADARHTAVARTAARLARAEFVSLPGVTHFGGLMQSALVLP 240

Query: 241 PVLSFLARRQG 251
           PVL FL R  G
Sbjct: 241 PVLDFLGRLPG 251


>gi|300310635|ref|YP_003774727.1| 3-ketoadipate enol-lactone
           hydrolase [Herbaspirillum seropedicae SmR1]
          Length = 261

 Score = 76.3 bits (186), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/122 (40%), Positives = 69/122 (56%), Gaps = 8/122 (6%)

Query: 1   MPFALSDNRKIHYQVEGNG--PPLLLHHGFTSSLEAWRFFGFTAALREHYQVIMFDALGH 58
           MPFA  +  ++HYQ+EG+   P L+L +   +SL  W          +H++V+ +D  GH
Sbjct: 1   MPFANVNAIRLHYQLEGDASLPVLVLSNSLGTSLSMWD--PQMPQWLQHFRVLRYDTRGH 58

Query: 59  GQSD-KPHETVAYSQPQRCRDALAVLDALGIERAHFFGYSLGGWVGYGLVRHAPQRLHSL 117
           GQS+  P E    S  Q   D +A+LD LGI +AHF G S+GG     L  H PQR++ L
Sbjct: 59  GQSEVTPGEC---SIAQLGSDVIALLDHLGIAQAHFCGLSMGGSTFMWLAVHHPQRINKL 115

Query: 118 IL 119
           IL
Sbjct: 116 IL 117


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.139    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 873,821
Number of extensions: 38381
Number of successful extensions: 156
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 3
Length of query: 251
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 168
Effective length of database: 1,226,865
Effective search space: 206113320
Effective search space used: 206113320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)