BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1575.p
         (317 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311047|ref|YP_003775139.1| arginase/agmatinase/formimionog...   632   0.0  
gi|300309408|ref|YP_003773500.1| arginase/agmatinase/formimionog...    72   8e-14

>gi|300311047|ref|YP_003775139.1|
           arginase/agmatinase/formimionoglutamate hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 317

 Score =  632 bits (1631), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/316 (97%), Positives = 313/316 (99%)

Query: 1   MEHELYQPLGGNVMPRFGGIATMMRLPHVQDAAGLDVGFVGVPLDIGTSNRSGTRFGPRQ 60
           MEH LYQPLGGNVMPRFGGIATMMRLPHV+D AGLDVGFVGVPLDIGTSNRSGTRFGPRQ
Sbjct: 1   MEHALYQPLGGNVMPRFGGIATMMRLPHVEDPAGLDVGFVGVPLDIGTSNRSGTRFGPRQ 60

Query: 61  IRSESVLLRPYNMATRAAPFDSLKVADLGDVALNPYSLLDSVRMIEEAYDRIYATGCKTI 120
           IR+ESVLLRPYNMATRAAPFDSLKVADLGDVALNPYSLLDSVRMIEEAYDRIYATGCKTI
Sbjct: 61  IRTESVLLRPYNMATRAAPFDSLKVADLGDVALNPYSLLDSVRMIEEAYDRIYATGCKTI 120

Query: 121 SLGGDHTLTLPILRAMARHRGPVGLIHVDAHADVNDTMNGEKIAHGTPFRRAFEEGLLDP 180
           SLGGDHTLTLPILRA+AR+RGPVGLIHVDAHADVNDTMNGEKIAHGTPFRRAFEEGLLDP
Sbjct: 121 SLGGDHTLTLPILRALARYRGPVGLIHVDAHADVNDTMNGEKIAHGTPFRRAFEEGLLDP 180

Query: 181 QRVVQIGLRGTGYHADDFDWCRAQGFRVVQAEECWHRSLAPLMDEVRAQMGDGPVYLTFD 240
           QRVVQIGLRGTGYHADDFDWCRAQGFRVVQAEECWHRSLAPLM+EVRAQMGDGPVYLTFD
Sbjct: 181 QRVVQIGLRGTGYHADDFDWCRAQGFRVVQAEECWHRSLAPLMEEVRAQMGDGPVYLTFD 240

Query: 241 IDGLDPAFAPGTGTPEIGGLTVQQGLEIIRGCKGLDIVSADVVEVSPPYDQAGTTALVAA 300
           IDGLDPAFAPGTGTPEIGGLTVQQGLEIIRGCKGLDIVSADVVEVSPPYDQAGTTALVAA
Sbjct: 241 IDGLDPAFAPGTGTPEIGGLTVQQGLEIIRGCKGLDIVSADVVEVSPPYDQAGTTALVAA 300

Query: 301 NLAYEMLCILPGVKYR 316
           NLAYEMLCILPGV YR
Sbjct: 301 NLAYEMLCILPGVTYR 316


>gi|300309408|ref|YP_003773500.1|
           arginase/agmatinase/formimionoglutamate hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 302

 Score = 71.6 bits (174), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 127/307 (41%), Gaps = 51/307 (16%)

Query: 37  VGFVGVPLDIGTSNRSGTRFGPRQIRSESVLLRPYNMATRAAPFDSLKVADLGDVA--LN 94
           +  +G P D+G S R G    P  +R   +         R      L V D GD+A   N
Sbjct: 4   IRMMGAPTDVGASRR-GASMAPAALRVAEL--------QRGLQQHGLDVIDGGDLAGPAN 54

Query: 95  PYS-----------LLDSVRMIEEAYDRIYATGCKTISLGGDHTLTLPILRAMARHRGPV 143
           P             ++   + + EA  +  A G   + +GGDH L +  + A+A H    
Sbjct: 55  PQQPPVQGLRHLEQVVQWNQTVHEAVAQCLADGELPLLMGGDHALAVGSIAAVAAHCRSQ 114

Query: 144 G----LIHVDAHADVNDTMNGEK-IAHGTPFRRAFEEG------------LLDPQRVVQI 186
           G    ++ +DAHAD N + +      HG P       G             L PQ++ Q+
Sbjct: 115 GKELRVLWLDAHADANTSQSTPTGNIHGMPVACLLGVGPAALTAIGGQTPALQPQQICQV 174

Query: 187 GLRGTGYHADDFDWCRAQGFRVVQAEECWHRSLAPLMDEVRAQMGDGP---VYLTFDIDG 243
           G+R      ++    R  G RV          +   M+E  A  G GP   ++++FD+D 
Sbjct: 175 GIRSVDR--EEKRHLRELGVRVFDMRHIDEYGMRQTMEEALA--GVGPQTHLHVSFDVDF 230

Query: 244 LDPAFAPGTGTPEIGGLTVQQG---LEIIRGCKGLDIVSADVVEVSPPYDQAGTTALVAA 300
           LD A APG GT   GG T ++    +E+I     L   S DV+E++P  D    TA +  
Sbjct: 231 LDAALAPGVGTAVPGGPTYREAQLCMEMIADTGAL--ASLDVMELNPACDVRNQTAELVV 288

Query: 301 NLAYEML 307
           +L   + 
Sbjct: 289 DLVESLF 295


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.140    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,102,583
Number of extensions: 50865
Number of successful extensions: 136
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 2
Length of query: 317
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 232
Effective length of database: 1,217,395
Effective search space: 282435640
Effective search space used: 282435640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)