BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1573.p (377 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311045|ref|YP_003775137.1| proline/glycine betaine ABC tra... 763 0.0 gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC trans... 168 5e-43 gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transport... 166 3e-42 gi|300311547|ref|YP_003775639.1| ABC transporter ATPase [Herbasp... 164 1e-41 gi|300312386|ref|YP_003776478.1| sugar ABC transporter ATPase [H... 158 8e-40 >gi|300311045|ref|YP_003775137.1| proline/glycine betaine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 377 Score = 763 bits (1971), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/377 (97%), Positives = 373/377 (98%) Query: 1 MIELDQLSKTYTQKDGTQVKAVDAVSLKVAEGEICVFLGPSGCGKTTTLKMINRLINPTS 60 MI LDQLSKTYTQKDGTQVKAVDAVSLKVAEGEICVFLGPSGCGKTTTLKMINRLINPTS Sbjct: 1 MIALDQLSKTYTQKDGTQVKAVDAVSLKVAEGEICVFLGPSGCGKTTTLKMINRLINPTS 60 Query: 61 GRVLLNGQDTSGIDEVELRRHIGYVIQQIGLFPNMTIEENITIVPRLLGWDKKRCQERAT 120 GRVLLNGQDTSGIDEVELRRHIGYVIQQIGLFPNMTIEENITIVPRLLGWDKKRCQERAT Sbjct: 61 GRVLLNGQDTSGIDEVELRRHIGYVIQQIGLFPNMTIEENITIVPRLLGWDKKRCQERAT 120 Query: 121 ELMAMVALDPKKFLKRYPRELSGGQQQRIGVIRALAADAPVLLMDEPFGAVDPINRESIQ 180 ELMAMVALDPKKFLKRYPRELSGGQQQRIGVIRALAADAPVLLMDEPFGAVDPINRESIQ Sbjct: 121 ELMAMVALDPKKFLKRYPRELSGGQQQRIGVIRALAADAPVLLMDEPFGAVDPINRESIQ 180 Query: 181 NEFFQMQRQLNKTVIMVSHDIDEAIKLGDKVAVFRAGKLVQFDNPDTLLARPKDDFVSAF 240 NEFFQMQRQLNKTVIMVSHDIDEAIKLGDKVAVFRAGKLVQFDNPDTLLARPKDDFVSAF Sbjct: 181 NEFFQMQRQLNKTVIMVSHDIDEAIKLGDKVAVFRAGKLVQFDNPDTLLARPKDDFVSAF 240 Query: 241 VGQDHTLKRLLLVRAGEAATTPATAQPDVSCDQALALMDDQDARYLTIIDADNRALGYLT 300 VGQDHTLKRLLLVRAGEAATTP TA PDVSCDQALALMDDQD+RYLTIIDADNRALGYLT Sbjct: 241 VGQDHTLKRLLLVRAGEAATTPPTAHPDVSCDQALALMDDQDSRYLTIIDADNRALGYLT 300 Query: 301 RRDVRGNSGVAEDKVRPFTMNAAPDENLRVVLSKMYKHSTSWMPVIANDGSYLGEVTQDS 360 RRDVRG++GVAEDKVRPFTMNA PDENLRVVLSKMYKHSTSWMPVIANDGSY+GEVTQDS Sbjct: 301 RRDVRGSTGVAEDKVRPFTMNADPDENLRVVLSKMYKHSTSWMPVIANDGSYVGEVTQDS 360 Query: 361 IASYLSSGKSRGMAMAA 377 IASYLSSGKSRGMAMAA Sbjct: 361 IASYLSSGKSRGMAMAA 377 >gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 168 bits (426), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 108/299 (36%), Positives = 162/299 (54%), Gaps = 14/299 (4%) Query: 2 IELDQLSKTYTQKDGTQVKAVDAVSLKVAEGEICVFLGPSGCGKTTTLKMINRLINPTSG 61 I L Q +K++ +GT +A+ + L++ GE V LGPSGCGKTTTL+MI L P G Sbjct: 10 IRLSQCAKSFA--NGT--RALQPLDLQIHPGETLVLLGPSGCGKTTTLRMIAGLEFPDEG 65 Query: 62 RVLLNGQDTSGIDEVELRRHIGYVIQQIGLFPNMTIEENITIVPRLLGWDKKRCQERATE 121 +L G++ + +E +R +G V Q LFPNM++ ENI ++ ER Sbjct: 66 GRVLFGEEDVTMLPIE-KRGVGMVFQNYALFPNMSVGENIAYGMKIRKIAAGERAERVER 124 Query: 122 LMAMVALDPKKFLKRYPRELSGGQQQRIGVIRALAADAPVLLMDEPFGAVDPINRESIQN 181 L+ MV L + R +LSGGQ+QR+ + RALA + VLL+DEP A+D RE++++ Sbjct: 125 LLEMVHL--QGLSHRRVDQLSGGQKQRVALARALAMEPRVLLLDEPLTALDAKLREAVRS 182 Query: 182 EFFQMQRQLNKTVIMVSHDIDEAIKLGDKVAVFRAGKLVQFDNPDTLLARPKDDFVSAFV 241 + ++ R L T I V+HD EA+ LGD++ V GK+ Q P + P +DFV+ F+ Sbjct: 183 DLNKLLRSLGITAIYVTHDQGEAMALGDRIVVMERGKISQIGTPQEIYYHPANDFVAEFI 242 Query: 242 GQDHTLKRLLLVRAGEAATTPATAQP----DVSCDQALALMDDQDARYLTIIDADNRAL 296 G + R+ + AG+ P P V+ A AL +D + I +AD L Sbjct: 243 G---AMNRVDGIVAGDRLQLPTGTLPLPPDAVAGQPAQALFRPEDVEVIDITEADAHCL 298 >gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 359 Score = 166 bits (419), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 93/236 (39%), Positives = 138/236 (58%), Gaps = 8/236 (3%) Query: 11 YTQKDGTQVKAVDAVSLKVAEGEICVFLGPSGCGKTTTLKMINRLINPTSGRVLLNGQDT 70 + QK A++ VSL GE+ LGPSGCGKTT L++I L +P SG+VLL+G+D Sbjct: 7 HIQKRFGSFTALNDVSLNFPAGELTALLGPSGCGKTTLLRIIAGLESPDSGQVLLDGEDA 66 Query: 71 SGIDEVELRRHIGYVIQQIGLFPNMTIEENIT----IVPRLLGWDKKRCQERATELMAMV 126 S E R +G+V Q LF +MT+ ENI + PR + +E+ L+ +V Sbjct: 67 SARHVRE--RQVGFVFQHYALFKHMTVFENIAFGLRVKPRSQRPSEAVIREKVKRLLELV 124 Query: 127 ALDPKKFLKRYPRELSGGQQQRIGVIRALAADAPVLLMDEPFGAVDPINRESIQNEFFQM 186 LD RYP +LSGGQ+QRI + RALA + VLL+DEPFGA+D R+ ++ ++ Sbjct: 125 QLD--WLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLRRL 182 Query: 187 QRQLNKTVIMVSHDIDEAIKLGDKVAVFRAGKLVQFDNPDTLLARPKDDFVSAFVG 242 +L+ T I V+HD +EA+++ D+V + G++ Q P+ + P FV F+G Sbjct: 183 HDELHVTSIFVTHDQEEALEVADQVVLMNKGQVEQIGTPEAVYNHPASPFVYGFLG 238 >gi|300311547|ref|YP_003775639.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 359 Score = 164 bits (415), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 97/241 (40%), Positives = 144/241 (59%), Gaps = 6/241 (2%) Query: 7 LSKTYTQKDGTQVKAVDAVSLKVAEGEICVFLGPSGCGKTTTLKMINRLINPTSGRVLLN 66 LS +K A+D VSL+V GE+ LGPSGCGKTT L+ I L SGR+ + Sbjct: 13 LSVREVEKRFGSFTALDRVSLEVRRGEMVCLLGPSGCGKTTLLRTIAGLERQDSGRLHAD 72 Query: 67 GQDTSGIDEVELRRHIGYVIQQIGLFPNMTIEENITIVPRLLGWDKKRCQERATELMAMV 126 G+D S + R G + Q LFPN+++ +N+ + +KR ER TE+++MV Sbjct: 73 GRDISQLPPQA--RDYGILFQSYALFPNLSVADNVAYGLGRMSRQQKR--ERVTEMLSMV 128 Query: 127 ALDPKKFLKRYPRELSGGQQQRIGVIRALAADAPVLLMDEPFGAVDPINRESIQNEFFQM 186 LD + +YP +LSGGQQQR+ + RALA +LL+DEP A+D RE +Q E ++ Sbjct: 129 GLDGSQ--DKYPGQLSGGQQQRVALARALAPSPSLLLLDEPLSALDAQVREHLQLEIRRL 186 Query: 187 QRQLNKTVIMVSHDIDEAIKLGDKVAVFRAGKLVQFDNPDTLLARPKDDFVSAFVGQDHT 246 Q+Q T +MV+HD +EA+ + D++AV + G++ QF P+ + RP FV+ F+GQ + Sbjct: 187 QKQFRITTLMVTHDQEEAMVMADRIAVMQHGRIEQFGTPEQIYRRPATPFVADFIGQANW 246 Query: 247 L 247 L Sbjct: 247 L 247 >gi|300312386|ref|YP_003776478.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 349 Score = 158 bits (399), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 84/229 (36%), Positives = 133/229 (58%), Gaps = 4/229 (1%) Query: 14 KDGTQVKAVDAVSLKVAEGEICVFLGPSGCGKTTTLKMINRLINPTSGRVLLNGQDTSGI 73 K + +AV + +V G+ V LGPSGCGK+TTL++I L P+SG + + G+D + + Sbjct: 11 KHWGEAQAVRNIDFEVKAGQFTVLLGPSGCGKSTTLRLIAGLDKPSSGSIHIGGRDVTQL 70 Query: 74 DEVELRRHIGYVIQQIGLFPNMTIEENITIVPRLLGWDKKRCQERATELMAMVALDPKKF 133 + R I V Q LFP++++ +NI R+ + + R + ++ L Sbjct: 71 PPAQ--RKISMVFQSYALFPHLSVRDNILFGVRVRKEPRAGYETRLKRVADILGL--AHL 126 Query: 134 LKRYPRELSGGQQQRIGVIRALAADAPVLLMDEPFGAVDPINRESIQNEFFQMQRQLNKT 193 L+R P +LSGGQQQR+ + RA+ ADAPV LMDEP +D R+ ++ E +Q+QLN T Sbjct: 127 LERRPAQLSGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREIRALQQQLNMT 186 Query: 194 VIMVSHDIDEAIKLGDKVAVFRAGKLVQFDNPDTLLARPKDDFVSAFVG 242 ++ V+HD EA+ + D+V + R G++ Q P L A+P F + F+G Sbjct: 187 MVYVTHDQTEAMSMADQVILLREGRIEQDAAPADLYAQPATAFAARFIG 235 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.135 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,088,447 Number of extensions: 42799 Number of successful extensions: 549 Number of sequences better than 1.0e-08: 129 Number of HSP's gapped: 306 Number of HSP's successfully gapped: 144 Length of query: 377 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 290 Effective length of database: 1,207,925 Effective search space: 350298250 Effective search space used: 350298250 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)