BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1570.p (237 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311042|ref|YP_003775134.1| proline/glycine betaine ABC tra... 403 e-114 gi|300311044|ref|YP_003775136.1| proline/glycine betaine ABC tra... 113 1e-26 gi|300309716|ref|YP_003773808.1| nitrate/sulfonate/bicarbonate A... 65 6e-12 gi|300309401|ref|YP_003773493.1| nitrate/sulfonate/bicarbonate A... 60 1e-10 gi|300313548|ref|YP_003777640.1| nitrate/sulfonate/bicarbonate A... 58 9e-10 >gi|300311042|ref|YP_003775134.1| proline/glycine betaine ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 237 Score = 403 bits (1036), Expect = e-114, Method: Compositional matrix adjust. Identities = 224/237 (94%), Positives = 231/237 (97%) Query: 1 MTRVRHVFAGAFGFALVLAGLVWWIGPEVIQKYRGDLVYYTGKHLELVFSSMVLALATGI 60 MTRVRHVFAGA GFALVLAGLVWWIGP+VIQKYRGDL+YYTGKHLELVF+SM+LALATGI Sbjct: 1 MTRVRHVFAGALGFALVLAGLVWWIGPDVIQKYRGDLIYYTGKHLELVFTSMLLALATGI 60 Query: 61 PAGIALSRPAAQGSAERFIQIFNIGNTIPSIAVLALALACFGIGNGPTILALWLASLLPI 120 PAGIALSRP AQ SAE+FIQIFNIGNTIPSIAVLALALA FGIGNGPTILALWLASLLPI Sbjct: 61 PAGIALSRPGAQRSAEKFIQIFNIGNTIPSIAVLALALAFFGIGNGPTILALWLASLLPI 120 Query: 121 VRNTYEGLRNVPASMKEAARGIGMKPHQILLRVELPNALPIIVGGVRTALAINVGTAPLS 180 VRNTYEGL+NVPA+MKEAARGIGMKPHQILLRVELPNALPIIVGGVRTALAINVGTAPLS Sbjct: 121 VRNTYEGLKNVPAAMKEAARGIGMKPHQILLRVELPNALPIIVGGVRTALAINVGTAPLS 180 Query: 181 MLIGGESLGGLIFPGIYLNNHGQLLLGAAATALLALVLDALVTTLSGCYLARRGLRT 237 MLIGGESLGGLIFPGIYLNNHGQLLLGAAATALLALVLDALVT LSG YLARRGLRT Sbjct: 181 MLIGGESLGGLIFPGIYLNNHGQLLLGAAATALLALVLDALVTALSGFYLARRGLRT 237 >gi|300311044|ref|YP_003775136.1| proline/glycine betaine ABC transporters permease [Herbaspirillum seropedicae SmR1] Length = 216 Score = 113 bits (283), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 81/204 (39%), Positives = 123/204 (60%), Gaps = 7/204 (3%) Query: 28 EVIQKYRGDLVYYTGKHLELVFSSMVLALATGIPAGIALSRPAAQGSAERFIQIFNIGNT 87 + +Q +++ T +HL+LV ++ LA+A G+P GI + R + A + + I T Sbjct: 5 QYLQSDWPNILELTLQHLKLVGIAVSLAIAIGVPLGILIVR--VRWLAGPLMGLATIVLT 62 Query: 88 IPSIAVLALALACF-----GIGNGPTILALWLASLLPIVRNTYEGLRNVPASMKEAARGI 142 +PSIA+ L + F GIG P I A++L SLLPI+RNTY L N+ A +KEA GI Sbjct: 63 LPSIALFGLMIPLFSKFGAGIGPLPAITAVFLYSLLPIMRNTYLALENIEAGIKEAGIGI 122 Query: 143 GMKPHQILLRVELPNALPIIVGGVRTALAINVGTAPLSMLIGGESLGGLIFPGIYLNNHG 202 GM Q L V+LP A+P+I+GGVRTA+ +N+G ++ +IG LG LI I +N Sbjct: 123 GMTFWQRLRMVDLPLAVPVILGGVRTAVVMNIGVMAIAAIIGAGGLGVLILHAISQSNMQ 182 Query: 203 QLLLGAAATALLALVLDALVTTLS 226 +L++GA ++LA++ D L+ L Sbjct: 183 KLVVGAVMISVLAIIADTLLQRLQ 206 >gi|300309716|ref|YP_003773808.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 273 Score = 64.7 bits (156), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 53/174 (30%), Positives = 83/174 (47%), Gaps = 14/174 (8%) Query: 74 SAERFIQIFNIG----NTIPSIAVLALALACFGIGNGPTILALWLASLLPIVRNTYEGLR 129 S++R + N+ IP IA + LA+ FG+GN P + + L + P++ NT G+R Sbjct: 104 SSQRIYGLMNLTVQVIRPIPPIAYIPLAILWFGLGNPPALFLISLGAFFPVLMNTIAGVR 163 Query: 130 NVPASMKEAARGIGMKPHQILLRVELPNALPIIVGGVRTALAINVGTAPLSMLIG----- 184 V + AAR +G + LRV LP A+P I+ GVR I +GTA + +++ Sbjct: 164 QVDSIYLRAARNLGASQSTLFLRVMLPAAVPYILSGVR----IGIGTAFIVVIVAEMIAV 219 Query: 185 GESLGGLIFPGIYLNNHGQLLLGAAATALLALVLDALVTTLSGCYLA-RRGLRT 237 LG I +++ G LL L +D ++ L+ L RGL Sbjct: 220 SNGLGFRIMEAREYFWSDKIIAGMITIGLLGLAIDLGMSRLNNYMLRWHRGLEN 273 >gi|300309401|ref|YP_003773493.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 288 Score = 60.5 bits (145), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 61/210 (29%), Positives = 101/210 (48%), Gaps = 12/210 (5%) Query: 35 GDLVYYTGKHLELVFSSMVLALATGIPAGIALSRPAAQGSAERFI--QIFNIGNTIPSIA 92 G+L T L+++ + VL GI A AL+ A R + + ++ N +P+IA Sbjct: 82 GELFGKTWLSLQVLLKAYVL----GIVAAFALTTLAVSTQFGRDLLGTLTSMFNPLPAIA 137 Query: 93 VLALALACFGIGNGPTILALWLASLLPIVRNTYEGLRNVPASMKEAARGIGMKPHQILLR 152 +L +AL FG+G G I L + L + NTY G V +++ A R G++ +L+ Sbjct: 138 LLPIALLWFGLGQGSLIFVLVHSVLWALAVNTYAGFLGVSDTLRMAGRNYGLRGLGFVLQ 197 Query: 153 VELPNALPIIVGGVRTALAINVGTAPLSMLIGGES-----LGGLIFPGIYLNNHGQLLLG 207 V +P ALP I+ G+R A T + L+ G + LG IF ++ G Sbjct: 198 VLVPAALPSILAGLRIGWAFAWRTLIAAELVFGATSGKGGLGWYIFQNRNELYTDKVFAG 257 Query: 208 AAATALLALVLDALV-TTLSGCYLARRGLR 236 A L+ L+++ LV TL + + G++ Sbjct: 258 LAMVILIGLLVENLVFNTLERVTVKKWGMQ 287 >gi|300313548|ref|YP_003777640.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 259 Score = 57.8 bits (138), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 49/196 (25%), Positives = 88/196 (44%), Gaps = 10/196 (5%) Query: 28 EVIQKYRGDLVYYTGKHLELVFSSMVLALATGIPAGIAL-SRPAAQGSAERFIQIFNIGN 86 + + Y G + + + +A+ G+ G + S P +A + FN Sbjct: 51 QAMVDYAGPITEHALSTFWVTMVGFAIAVVVGVTLGFVIGSSPMLYAAAYPLMTAFN--- 107 Query: 87 TIPSIAVLALALACFGIGNGPTILALWLASLLPIVRNTYEGLRNVPASMKEAARGIGMKP 146 +P A + + + FGIG GP IL +L S PI+ N GL + +++ R +G + Sbjct: 108 ALPKAAFVPVLVVWFGIGAGPAILTAFLISFFPIMVNIATGLATLEPELEDVLRVLGARR 167 Query: 147 HQILLRVELPNALPIIVGGVRTALAIN-VGTAPLSMLIGGESLGGLIFPG-----IYLNN 200 ILL+V LP ++P ++ A+ + VG+ M + +G L+ + L Sbjct: 168 MDILLKVGLPRSMPYFFASLKVAITLAFVGSTVSEMNASNQGIGYLLVSAGSSMKMPLAF 227 Query: 201 HGQLLLGAAATALLAL 216 G +++GA A A+ L Sbjct: 228 AGLVVIGAMAMAMYEL 243 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.326 0.142 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 643,556 Number of extensions: 25967 Number of successful extensions: 217 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 218 Number of HSP's successfully gapped: 12 Length of query: 237 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 155 Effective length of database: 1,231,600 Effective search space: 190898000 Effective search space used: 190898000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 129 (54.3 bits)