BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1552.p
         (294 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311010|ref|YP_003775102.1| drug/metabolite transporter (DM...   391   e-110

>gi|300311010|ref|YP_003775102.1| drug/metabolite transporter (DMT)
           superfamily permease [Herbaspirillum seropedicae SmR1]
          Length = 356

 Score =  391 bits (1004), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 215/283 (75%), Positives = 240/283 (84%)

Query: 4   PTLAGILVALIWGIQPVISRYGLQQGLTPYDATLLRYLTSGLLVLPYACKRGLIGACGVG 63
           P LAGILVALIWGIQPVISRYG Q GLTP DATL+RYLTSGLL+LPY  +RGL  ACG+ 
Sbjct: 50  PLLAGILVALIWGIQPVISRYGFQHGLTPQDATLVRYLTSGLLMLPYVWRRGLAKACGLR 109

Query: 64  WSRGLVLFILSGPLFSLVLVAGVNYAPASHGALIHPALTPLFGLAISRFVFGQRERFSLW 123
           W R LVLF+LSGPLFSLVLV GVNYAPASHGALIHPALTPLFG+AISRFVF + ERFSLW
Sbjct: 110 WPRALVLFLLSGPLFSLVLVGGVNYAPASHGALIHPALTPLFGMAISRFVFRRDERFSLW 169

Query: 124 GMLLLLAGLVLVGLNGLLASGGLKPAGAWRGDLLFVLSAFMWAWYLVLNRNWKIAPLDAV 183
           G +LL+ GL++VGL+G++A G L P GAWRGDLLFVLSAFMWAWYLVLN+ W + PLDAV
Sbjct: 170 GTVLLVGGLLVVGLHGVMAGGSLAPEGAWRGDLLFVLSAFMWAWYLVLNKTWGLPPLDAV 229

Query: 184 ALTQVLSLGCMVLTLPWLGGQTFGKPLPALLLQSAYHGVLVSIVSVALFNWVVARLGVKA 243
           A+TQVLSLG ++  LPW G +TF KP  AL LQS YHGVLVSIVSVALFNWVVARLGVKA
Sbjct: 230 AMTQVLSLGWVLAVLPWQGPETFAKPWAALALQSLYHGVLVSIVSVALFNWVVARLGVKA 289

Query: 244 LMLNALSPLFGVIASAGVLREPLSVSMMVGAVVIVGGLGVGLR 286
           +MLNALSPLFGV+ASA  LREPL  SM+ GA  I+ GL + LR
Sbjct: 290 MMLNALSPLFGVLASAWALREPLPPSMLAGAAAIMAGLALSLR 332


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.145    0.455 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 846,370
Number of extensions: 34506
Number of successful extensions: 186
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 2
Length of query: 294
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 210
Effective length of database: 1,222,130
Effective search space: 256647300
Effective search space used: 256647300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 130 (54.7 bits)