BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1551.p
         (561 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310626|ref|YP_003774718.1| filamentous hemagglutinin prote...   187   3e-48
gi|300312548|ref|YP_003776640.1| filamentous hemagglutinin outer...   129   5e-31

>gi|300310626|ref|YP_003774718.1| filamentous hemagglutinin protein
            [Herbaspirillum seropedicae SmR1]
          Length = 2658

 Score =  187 bits (474), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 118/205 (57%), Positives = 147/205 (71%)

Query: 1    VTRSGVSGAAVTITDAQAQQARTGQSADQAVASLDTSVRTGKDSSNSLAKNWDGNQLRED 60
            VTRSG+SG  V ITD Q Q+A TGQSA+Q +ASL+  V + KDSS +L+K WDG  LR+ 
Sbjct: 2094 VTRSGISGGTVIITDEQGQKAATGQSAEQILASLNRDVDSSKDSSGALSKAWDGEALRQQ 2153

Query: 61   VEAQAKITQAFGQQAAKAIGDYAGTKQRELEQAAKTASLEGDETSAANLRTEAAKWSEGG 120
            VEA+A+I QAFGQ  AK+IGDYA TK+R+L+ AAK A  +GD   AA LR EAA+W E G
Sbjct: 2154 VEAEAQIRQAFGQTVAKSIGDYADTKERDLKNAAKQAEQDGDAEQAAKLRAEAARWGEDG 2213

Query: 121  EYRVGAHTAIGLLGGGVGGALGAAASASLMPDIAKQIEKLKLPPALETAVSLAAAAGIGA 180
              R   H A G L GG+ GA  AAA + LMP +A+QI+K+ LP  LE  V+ AAA+G+GA
Sbjct: 2214 TARAAVHAAAGALSGGLAGAASAAAVSKLMPSLAEQIKKMGLPSELEGVVAAAAASGLGA 2273

Query: 181  AVGGDAGAASAYNVDLNNRILHKEE 205
             +GG AGAA+A  VDLNNR LH+ E
Sbjct: 2274 IIGGSAGAATAVTVDLNNRQLHQSE 2298


>gi|300312548|ref|YP_003776640.1| filamentous hemagglutinin outer
            membrane protein [Herbaspirillum seropedicae SmR1]
          Length = 2685

 Score =  129 bits (325), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 74/155 (47%), Positives = 102/155 (65%), Gaps = 4/155 (2%)

Query: 2    TRSGVSGAAVTITDAQAQQARTGQSADQAVASLDTSVRTGKDSSNSLAKNWDGNQLREDV 61
            TRSG+S A + ITD  AQQA+TG++A+Q +AS++  V + +D+S  +AK W+G +L+ DV
Sbjct: 2049 TRSGISQADIKITDDAAQQAKTGKTAEQTIASINADVSSERDTSGKIAKTWNGQELQADV 2108

Query: 62   EAQAKITQAFGQQAAKAIGDYAGTKQRELEQAAKTASLEGDETSAANLRTEAAKWSEGGE 121
            EAQA+IT+AFGQQ A+  G YA +K++EL QAA  A+  GD+T A  L  EA +W +GGE
Sbjct: 2109 EAQAEITRAFGQQVAQLAGAYAESKEKELRQAASNAAQNGDQTQALLLGAEADQWKDGGE 2168

Query: 122  YRVGAHT----AIGLLGGGVGGALGAAASASLMPD 152
             +          IG LGG   G L A ASA  + D
Sbjct: 2169 NKRALKAITTLVIGGLGGQSAGQLLANASAPYLAD 2203


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.310    0.127    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,530,530
Number of extensions: 60587
Number of successful extensions: 229
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 228
Number of HSP's successfully gapped: 2
Length of query: 561
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 471
Effective length of database: 1,193,720
Effective search space: 562242120
Effective search space used: 562242120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 133 (55.8 bits)