BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1548.p (626 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312548|ref|YP_003776640.1| filamentous hemagglutinin outer... 394 e-111 gi|300310626|ref|YP_003774718.1| filamentous hemagglutinin prote... 290 2e-79 >gi|300312548|ref|YP_003776640.1| filamentous hemagglutinin outer membrane protein [Herbaspirillum seropedicae SmR1] Length = 2685 Score = 394 bits (1013), Expect = e-111, Method: Compositional matrix adjust. Identities = 268/620 (43%), Positives = 380/620 (61%), Gaps = 48/620 (7%) Query: 1 MNRQRYKLVFNRHRGQLMAVAEIASSIQHQGRTAGPSGTLPDLLPSALRFSLLSVALALA 60 MN+ Y+++FN+ RG LMAVAE + + G LP A R S + +A+ LA Sbjct: 1 MNQLCYRIIFNKTRGLLMAVAETTRACAGKRAVGSRPGVALGGLPMA-RLSWIGLAVLLA 59 Query: 61 MNTV------AHAQILGDRTAPRTQQPTVLVTPNGVPVVNIQTPSTAGVSLNRYRQFDVG 114 + A+AQI+ D APR QQP V+ T NG+P VNIQTPS AGVS N Y QFDV Sbjct: 60 TGALVTTMPRAYAQIIADPNAPRAQQPVVVNTANGIPQVNIQTPSAAGVSRNTYSQFDVN 119 Query: 115 TNGVILNNARSTTSTQLGGYVAGNPWLATGAARVIVNQVNSPNPSYLRGYLEVAGNRAQV 174 G ILNN+RS TQLGG+V NP LA G ARVI+N+VNS NPS LRG++EVAG+RAQV Sbjct: 120 RAGAILNNSRSDVQTQLGGWVQRNPNLANGTARVILNEVNSSNPSMLRGFVEVAGDRAQV 179 Query: 175 VVANPAGITCAGCGFINANRATLTTGVPQINNGNLDSYRVASGAVNIEGNGLDASRTDYA 234 ++ANP+G+TC GCGFINA+R+TLTTG P INNG+LD Y V G V+I+GNGL+ S++ + Sbjct: 180 IIANPSGVTCDGCGFINASRSTLTTGTPIINNGSLDGYLVRGGVVSIKGNGLNDSQSSFT 239 Query: 235 EIIARAVQVNAGVWAPELKVSAGLNTVSADHASVQPGVAPSDAAPAVAIDVAQLGGMYAG 294 ++IARA ++NAG+W+ ELKV+ G N V+AD+ +V V+ A P IDVAQLGGMYA Sbjct: 240 DLIARAAKINAGIWSKELKVTVGTNQVNADNTTV-TAVSADPAKPQFGIDVAQLGGMYAN 298 Query: 295 HIYLTSTEHGVGVRNAGTIGAAVGQAVVTADGRLENSGSLSANGLLAVQTTGGVRNSGEL 354 I L TE GVGVRNAG IGAA G+ +TA GR+ENSGSL+A L V+ TG G++ Sbjct: 299 KIVLVGTESGVGVRNAGAIGAAAGELTLTAAGRIENSGSLAATASLGVRATG---QGGDI 355 Query: 355 GSKSAASITTTALDNAGSMASSGALTVQASDSVLNTGSIGGEGPVQVSATSIDNRNSL-G 413 +++ +S+ A+ +QA + N+ +I + V ++A S+ N ++ Sbjct: 356 ------------VNSGSVASSAAAVKLQADGGINNSNTISAQSGVTLTAASLQNSGAISA 403 Query: 414 SSASLTMQTSAGIRNSGTLQATTDATLNAGTLDNSGTLSARQGSVRINSSGSTTNSGRIE 473 ++ ++ + T + NSG +QA D +++A + QG N++ +N+G IE Sbjct: 404 ATGNVEVDTHGAVNNSGKVQAAGDISISA---------TQPQG----NAAADISNTGNIE 450 Query: 474 AVQTVAVQADG-LTNSGNINAVDALRVQAAQAISNSGTLG--ANGGVELKSATLDN-RGT 529 A + + ADG L+N G+I A ++R Q + N+G++G +N L+ + G Sbjct: 451 AAGQLGLTADGMLSNDGSITA-QSIRA-GVQGLRNNGSIGTRSNAAFTLQQGLVQGANGR 508 Query: 530 LASSQDALTITTSGQLANQGQVSAAQSLTLTGAGIDNSAG-TLNATDIHLDSQSQTFSNR 588 L++ D L +T G N G+V A +LTL+ A I N +G L A DI L + ++ + Sbjct: 509 LSAVSD-LNLTMQGDYDNAGRVQ-ANTLTLSAANIGNRSGAALQAADITLTALNRL--DN 564 Query: 589 GGQVSAQRDLQIASGSLDNS 608 G++SA R L I + S+ NS Sbjct: 565 AGEISANRQLNITADSILNS 584 >gi|300310626|ref|YP_003774718.1| filamentous hemagglutinin protein [Herbaspirillum seropedicae SmR1] Length = 2658 Score = 290 bits (743), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 225/582 (38%), Positives = 308/582 (52%), Gaps = 61/582 (10%) Query: 48 LRFSLLSVALALAMNTVAHAQILGDRTAPRTQQPTVLVTPNGVPVVNIQTPSTAGVSLNR 107 LR ++ ++ + L + + QI+ D A ++P V T NG P+V I TPS AGVS N+ Sbjct: 19 LRRAMAALMIMLCVVPPGYPQIVADPNAGAGKRPVVDNTANGRPLVQIATPSAAGVSHNQ 78 Query: 108 YRQFDVGTNGVILNNARSTTSTQLGGYVAGNPWLATGAARVIVNQVNSPNPSYLRGYLEV 167 Y QF+VG NG ILNNAR TQ GGYV NP L GAARVI+N+V S +PS LRGY EV Sbjct: 79 YSQFNVGPNGAILNNARDVVLTQQGGYVGANPNLQGGAARVILNEVTSTSPSQLRGYTEV 138 Query: 168 AGNRAQVVVANPAGITCAGCGFINANRATLTTGVPQI-NNGNLDSYRVASGAVNIEGNGL 226 AG RA+V++ANP GI+C GCGFIN +R LTTGVP NG+L+++RV+ GA+ I GL Sbjct: 139 AGQRAEVIIANPNGISCDGCGFINTSRGVLTTGVPLFGGNGSLEAFRVSRGAIQIGSGGL 198 Query: 227 DASRTDYAEIIARAVQVNAGVWAPELKVSAGLNTVSADHASVQPGVAPSDAAPAVAIDVA 286 + + TD ++IAR+VQVN +W L + G N V+ + +A AP + +DVA Sbjct: 199 NGANTDQLDLIARSVQVNGELWGNRLNLVTGANRVNYGDLGLSV-IAGEGNAPTIGVDVA 257 Query: 287 QLGGMYAGHIYLTSTEHGVGVRNAGTIGAAVGQAVVTADGRLENSGSLSA---------- 336 ++GGMYA I L TE+GVGVR+ GT+ A G +++ G++ SG SA Sbjct: 258 RMGGMYAQKIMLVGTENGVGVRSLGTLAAQAGSFTLSSQGQIALSGKTSASDDIVLKSAV 317 Query: 337 ----NGLLA----VQTTGGV-RNSGELGSKSAASITTTAL----------DNAGSMASSG 377 +G+L Q GGV N+G L ++ IT L D AG++A +G Sbjct: 318 GTSNDGVLYAGRNAQLQGGVIENAGTLSAQGNLDITAAQLRSTGTLAAGVDQAGNVAQAG 377 Query: 378 ALTVQASDSVLNTGSIGGEGPVQVSATSIDNRNSLGSSA-SLTMQTSAGIRNSGTLQATT 436 LTV AS VL TG +Q+ ID +S S+ L Q S + G T Sbjct: 378 NLTVTASGDVLATGVNRAGADLQLVGGKIDLSHSSSSAGRKLGAQASDALTLGGATVETL 437 Query: 437 --DATLNAGTLDNSGTLSARQGSVRINS-SGSTTNSGRIEAVQTVAVQADGLTNS-GNIN 492 D L T+ G RIN+ +G + G I + + V A + NS G I+ Sbjct: 438 AGDLELGGATITLDGAKLTSSADARINAVAGLSNRGGEITSAGAMNVTAASVDNSAGMIS 497 Query: 493 AVD----ALRVQAAQAISN--------------------SGTLGANGGVELKSATLDNR- 527 A L +++A +ISN G++ ANG L +L+N Sbjct: 498 AATGGAGVLSLRSAGSISNGQGRIAAGAALNLAAASIQGQGSVIANGDATLSLQSLNNEA 557 Query: 528 GTLASSQDALTITTSGQLANQGQVSAAQSLTLTGAGIDNSAG 569 G+L S L ITTSG NQG + A +L LT + IDN+AG Sbjct: 558 GSLIQSNRDLRITTSGATGNQGALKAIGALNLTASQIDNAAG 599 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.310 0.125 0.340 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,869,836 Number of extensions: 81046 Number of successful extensions: 446 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 373 Number of HSP's successfully gapped: 6 Length of query: 626 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 535 Effective length of database: 1,188,985 Effective search space: 636106975 Effective search space used: 636106975 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 133 (55.8 bits)