BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1546.p
         (392 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311007|ref|YP_003775099.1| O6-methylguanine-DNA methyltran...   570   e-164
gi|300309400|ref|YP_003773492.1| methylated-DNA-protein-cysteine...    80   4e-16
gi|300310182|ref|YP_003774274.1| methylated-DNA-protein-cysteine...    75   1e-14

>gi|300311007|ref|YP_003775099.1| O6-methylguanine-DNA
           methyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 369

 Score =  570 bits (1469), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 289/366 (78%), Positives = 318/366 (86%), Gaps = 4/366 (1%)

Query: 1   MPTM--MTPQPLAQPEPPGNRHDDELRWQAVQGRDPTADGRFWYAVKSTGVYCKPSCGAR 58
           MPT+  +   P A  EP  +   D  RW+AVQ RD  ADG+FWY+VK+TGVYC+PSCGAR
Sbjct: 1   MPTLPELPNDPAASSEPIDS--TDLARWRAVQQRDQAADGQFWYSVKTTGVYCRPSCGAR 58

Query: 59  TPLRKNVSFHDSCAAAEAAGFRPCQRCKPDQPPLQQRQAQAIAQACRLIEAAQQAPATDI 118
           TPLRKNV+FH SCAAAEAAGFRPCQRC+PD PPL QRQA+A+AQACRLIEAA+ AP T  
Sbjct: 59  TPLRKNVAFHASCAAAEAAGFRPCQRCRPDLPPLAQRQAEAVAQACRLIEAAETAPDTAA 118

Query: 119 LAQAVGLSRYHFHRLFKQHTGLTPKAYADAHRASRLRTQLGDSPSVTAAFYEAGFNSSGR 178
           LA+AVGLSRYHFHR+FK HTG+TPKAYADAHR  RLR QLG   SVT A YEAGFNSSGR
Sbjct: 119 LAEAVGLSRYHFHRIFKAHTGVTPKAYADAHRGQRLRAQLGQGSSVTEALYEAGFNSSGR 178

Query: 179 FYAHSAAQLGMKPATYRRGGSGEKIRFAVAQCWLGALLVAATEQGICAITLGAEAKPLVQ 238
           FYAHS AQLGMKP  YRRGGSGE+IRFAVAQCWLGALLVAAT QGICA+TLG +A  LV+
Sbjct: 179 FYAHSDAQLGMKPTAYRRGGSGERIRFAVAQCWLGALLVAATGQGICAVTLGEDADVLVR 238

Query: 239 QLQDRFPQADLAPADAAFEQTLAQVLAVLHDPQHGAALPLDVRGTAFQQRVWQALRAVPP 298
           QLQDRFPQADLAP DA FE+TLAQVLA L DP+ GAALPLDVRGTAFQQRVWQALR++PP
Sbjct: 239 QLQDRFPQADLAPGDADFERTLAQVLAALEDPRQGAALPLDVRGTAFQQRVWQALRSIPP 298

Query: 299 GVTLTYAELAARIGQPKAVRAVANACAQNEIAVLIPCHRIVRLDGSPSGYRWGVERKAAL 358
           GVTLTY+ELAAR+GQP AVRAVANACA NEIAVLIPCHRIVRLDGSPSGYRWG++RKAAL
Sbjct: 299 GVTLTYSELAARLGQPAAVRAVANACANNEIAVLIPCHRIVRLDGSPSGYRWGIQRKAAL 358

Query: 359 LAQEAA 364
           LA+EAA
Sbjct: 359 LAREAA 364


>gi|300309400|ref|YP_003773492.1| methylated-DNA-protein-cysteine
           methyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 190

 Score = 79.7 bits (195), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 58/101 (57%)

Query: 276 LPLDVRGTAFQQRVWQALRAVPPGVTLTYAELAARIGQPKAVRAVANACAQNEIAVLIPC 335
           LPL   GT FQ++VW AL  +P G T TY ++A ++G  KAVRAV  A  +N I ++ PC
Sbjct: 71  LPLHFEGTEFQRQVWSALLDIPYGQTRTYLDIARQLGNEKAVRAVGAANGRNPICIIAPC 130

Query: 336 HRIVRLDGSPSGYRWGVERKAALLAQEAAASGAPAATHVQD 376
           HR++   G  +G+  G+  K  LLA E  ++       V D
Sbjct: 131 HRVIGAGGELTGFAGGLHVKKLLLAIEGISTEGRDIGQVID 171


>gi|300310182|ref|YP_003774274.1| methylated-DNA-protein-cysteine
           S-methyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 178

 Score = 74.7 bits (182), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 66/132 (50%), Gaps = 2/132 (1%)

Query: 212 LGALLVAATEQGICAITLGAEAKPLVQQLQDRFPQADLAPADAAFEQTLAQVLAVLHDPQ 271
           L AL  A        + +  EA  LV+ +      A+    DA   Q + Q+   L DP 
Sbjct: 19  LTALFSAVVHTPFGGMGVRTEAGALVEMVYLPPHYAEKDATDAVAAQAVQQITHYLADPA 78

Query: 272 HGAALPLDVRGTAFQQRVWQALRAVPPGVTLTYAELAARIGQPKAVRAVANACAQNEIAV 331
           +   LP    G+AFQQRVWQA+ A+P G  LTY ++A RI    A RAV  AC  N   +
Sbjct: 79  YRFDLPRLSVGSAFQQRVWQAIMAIPCGQVLTYGQVAKRI--QSAPRAVGQACGANWYPL 136

Query: 332 LIPCHRIVRLDG 343
           +IPCHR+    G
Sbjct: 137 VIPCHRVTAAGG 148


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.131    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,224,148
Number of extensions: 49169
Number of successful extensions: 225
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 227
Number of HSP's successfully gapped: 3
Length of query: 392
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 305
Effective length of database: 1,207,925
Effective search space: 368417125
Effective search space used: 368417125
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)