BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1545.p (172 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311006|ref|YP_003775098.1| transcription regulator protein... 347 3e-97 gi|300313266|ref|YP_003777358.1| AsnC family transcription regul... 122 2e-29 gi|300312490|ref|YP_003776582.1| transcription regulator protein... 100 8e-23 gi|300309515|ref|YP_003773607.1| leucine-responsive regulatory p... 97 6e-22 gi|300311014|ref|YP_003775106.1| leucine-responsive regulatory D... 94 7e-21 >gi|300311006|ref|YP_003775098.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 172 Score = 347 bits (890), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 170/172 (98%), Positives = 170/172 (98%) Query: 1 MSIINVDRYDLALLTELQRDGHITNSALGLKVHLSTSQISRRVQRLEEAHVIERYTAVLD 60 MSIINVDRYDLALLTELQRDGHITNSALG KVHLSTSQISRRVQRLEEAHVIERYTAVLD Sbjct: 1 MSIINVDRYDLALLTELQRDGHITNSALGQKVHLSTSQISRRVQRLEEAHVIERYTAVLD 60 Query: 61 PAVVGLGVTAFTTVTLDRQGETRGELFEKAVEAMPEVTECFSVTGEGDYILRIVAPDLAA 120 PAVVGLGVTAFTTVTLDRQGETRGELFEKAVE MPEVTECFSVTGEGDYILRIVAPDLAA Sbjct: 61 PAVVGLGVTAFTTVTLDRQGETRGELFEKAVETMPEVTECFSVTGEGDYILRIVAPDLAA 120 Query: 121 FSEFMMTRLLRLPGVTNVKSNITLKKVKQSHELPLEHVMQPVKSRQRIRFSQ 172 FSEFMMTRLLRLPGVTNVKSNITLKKVKQSHELPLEHVMQPVKSRQRIRFSQ Sbjct: 121 FSEFMMTRLLRLPGVTNVKSNITLKKVKQSHELPLEHVMQPVKSRQRIRFSQ 172 >gi|300313266|ref|YP_003777358.1| AsnC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 159 Score = 122 bits (305), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 62/151 (41%), Positives = 90/151 (59%) Query: 4 INVDRYDLALLTELQRDGHITNSALGLKVHLSTSQISRRVQRLEEAHVIERYTAVLDPAV 63 + +D DL +L LQ + I+N L +++LS S RV+RLE +I RY A+ DP + Sbjct: 1 MELDTTDLRILNILQENSSISNLELASRINLSPSPTLARVKRLESEGIISRYVALADPHL 60 Query: 64 VGLGVTAFTTVTLDRQGETRGELFEKAVEAMPEVTECFSVTGEGDYILRIVAPDLAAFSE 123 +GL V F V L+RQG FE AV A EV E + +TG+ DY+LRIV PDL Sbjct: 61 LGLKVNVFVKVILERQGAEALAQFETAVSAFDEVMEVYLMTGDEDYLLRIVVPDLLTLEH 120 Query: 124 FMMTRLLRLPGVTNVKSNITLKKVKQSHELP 154 F++ L ++PG+ N++S+ LK++K LP Sbjct: 121 FIVDHLTKIPGIKNIRSSFALKQIKYKTALP 151 >gi|300312490|ref|YP_003776582.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 153 Score = 100 bits (248), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 57/153 (37%), Positives = 82/153 (53%) Query: 4 INVDRYDLALLTELQRDGHITNSALGLKVHLSTSQISRRVQRLEEAHVIERYTAVLDPAV 63 +++DR D +L LQ+DG I N+ L K+ +S + +RL E ++ A+LDP Sbjct: 1 MSLDRMDKRILKALQKDGRIGNAELAKKLGMSATACWNHTKRLMEEGYVKEVRAILDPEK 60 Query: 64 VGLGVTAFTTVTLDRQGETRGELFEKAVEAMPEVTECFSVTGEGDYILRIVAPDLAAFSE 123 +GL V V LDR FEKAV + V EC + GE DY +++ DL AF+ Sbjct: 61 LGLPVLVTVGVVLDRSTPESFAEFEKAVRDIAAVQECLLLAGEFDYWIKLRVKDLQAFNR 120 Query: 124 FMMTRLLRLPGVTNVKSNITLKKVKQSHELPLE 156 LLRLPGV ++S L +VK + EL +E Sbjct: 121 LHANTLLRLPGVRQLRSFFVLNEVKNNPELVVE 153 >gi|300309515|ref|YP_003773607.1| leucine-responsive regulatory protein [Herbaspirillum seropedicae SmR1] Length = 154 Score = 97.1 bits (240), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 52/150 (34%), Positives = 86/150 (57%) Query: 6 VDRYDLALLTELQRDGHITNSALGLKVHLSTSQISRRVQRLEEAHVIERYTAVLDPAVVG 65 +D+ +L ELQ DG I+N L +V+LS + RV++L+EA I Y A L+P ++ Sbjct: 4 LDKISKKILAELQNDGRISNVDLAARVNLSPAACLERVRKLQEAGYILGYAAQLNPELLD 63 Query: 66 LGVTAFTTVTLDRQGETRGELFEKAVEAMPEVTECFSVTGEGDYILRIVAPDLAAFSEFM 125 + + F V LDR F+K+V+++PE+ EC V G DY+++ D+ A+ EF+ Sbjct: 64 VSLLVFIEVVLDRTTPDVFAEFKKSVQSIPEIMECHMVAGGFDYLVKSRVKDMNAYREFL 123 Query: 126 MTRLLRLPGVTNVKSNITLKKVKQSHELPL 155 LL+L GV + +++VK + LP+ Sbjct: 124 GKSLLQLKGVRETHTYAVMEEVKNTIRLPI 153 >gi|300311014|ref|YP_003775106.1| leucine-responsive regulatory DNA-binding transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 162 Score = 93.6 bits (231), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 51/155 (32%), Positives = 88/155 (56%) Query: 2 SIINVDRYDLALLTELQRDGHITNSALGLKVHLSTSQISRRVQRLEEAHVIERYTAVLDP 61 S+ +D+ D +L LQ+DG I+ LG +V LS + RV+R+E VI Y A ++P Sbjct: 7 SVRTLDKLDHRILAVLQKDGRISMKELGEQVGLSVTPCIERVRRMERDGVITGYYARVNP 66 Query: 62 AVVGLGVTAFTTVTLDRQGETRGELFEKAVEAMPEVTECFSVTGEGDYILRIVAPDLAAF 121 +G + F +TL+ + E F + V +PEV EC V+G+ DY+++ +A + Sbjct: 67 ESLGATLLVFVEITLNHKSGNMFEQFRREVLRIPEVQECHLVSGDFDYLIKARIRGMAEY 126 Query: 122 SEFMMTRLLRLPGVTNVKSNITLKKVKQSHELPLE 156 + + LL+LPG KS + ++++K++ LPL+ Sbjct: 127 RKLLGDILLQLPGAAQSKSYVVMEEIKETLALPLD 161 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.134 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 485,997 Number of extensions: 17894 Number of successful extensions: 79 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 78 Number of HSP's successfully gapped: 9 Length of query: 172 Length of database: 1,619,870 Length adjustment: 79 Effective length of query: 93 Effective length of database: 1,245,805 Effective search space: 115859865 Effective search space used: 115859865 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)