BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1544.p
         (369 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311005|ref|YP_003775097.1| 4-hydroxyphenylpyruvate dioxyge...   707   0.0  
gi|300313061|ref|YP_003777153.1| 4-hydroxyphenylpyruvate dioxyge...   171   1e-43

>gi|300311005|ref|YP_003775097.1| 4-hydroxyphenylpyruvate
           dioxygenase-like protein [Herbaspirillum seropedicae
           SmR1]
          Length = 364

 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/369 (93%), Positives = 354/369 (95%), Gaps = 5/369 (1%)

Query: 1   MGHADSQFTPDTTAAATSQDLFDNPMGTDGFEFVEYTAADPAAIAGVLELMGFTAVARHR 60
           MGH ++ F P     A S DLFDNPMGTDGFEFVEYTAADPAAIA VLELMGFTAVARHR
Sbjct: 1   MGHTETNFAP-----AASGDLFDNPMGTDGFEFVEYTAADPAAIARVLELMGFTAVARHR 55

Query: 61  SKNVTLYRQGQINFILNGEPDSNAAAFAQVHGASVNAMAFRVKDAAHVYQRALELGAEGV 120
           SKNVTLYRQGQ+NFILNGEP SNAAAFAQVHGASVNAMAFRVKDAA VY+RALELGAEGV
Sbjct: 56  SKNVTLYRQGQVNFILNGEPGSNAAAFAQVHGASVNAMAFRVKDAAQVYKRALELGAEGV 115

Query: 121 EAKLGPMELNIPAIRGIGGSLLYLVDRYGDHGSIYDVDFQFFPGVERNPKGVGLTYIDHL 180
           EAKLGPMELNIPAIRGIGGSLLYLVDRYG++GSIYDVDFQFFPGVERNPKGVGLTYIDHL
Sbjct: 116 EAKLGPMELNIPAIRGIGGSLLYLVDRYGENGSIYDVDFQFFPGVERNPKGVGLTYIDHL 175

Query: 181 THNVMRGAMDTWSSFYTRLFNFREIKYFDIEGKVTGLRSRAMTSPCGKIRIPINESADDK 240
           THNVMRGAMDTWSSFYTRLFNFREIKYFDIEGKVTGLRSRAMTSPCGKIRIPINESADDK
Sbjct: 176 THNVMRGAMDTWSSFYTRLFNFREIKYFDIEGKVTGLRSRAMTSPCGKIRIPINESADDK 235

Query: 241 SQIEEFIKQYNGEGIQHIALGTDDIYQTVRALRARGVPLQDTIATYYDLVERRIPGHGED 300
           SQIEEFIKQYNGEGIQHIALGTDDIYQTVRALR RGVPLQDTI+TYYDLVERRIPGHGED
Sbjct: 236 SQIEEFIKQYNGEGIQHIALGTDDIYQTVRALRERGVPLQDTISTYYDLVERRIPGHGED 295

Query: 301 LEALRELKILIDGAPTADQGLLLQIFTQNLIGPVFYEIIQRKGNDGFGEGNFKALFESIE 360
           L+ALRELKILIDGAPTA QGLLLQIFTQNLIGPVFYEIIQRKGNDGFGEGNFKALFESIE
Sbjct: 296 LDALRELKILIDGAPTAGQGLLLQIFTQNLIGPVFYEIIQRKGNDGFGEGNFKALFESIE 355

Query: 361 LDQMRRGVI 369
           LDQMRRGVI
Sbjct: 356 LDQMRRGVI 364


>gi|300313061|ref|YP_003777153.1| 4-hydroxyphenylpyruvate
           dioxygenase [Herbaspirillum seropedicae SmR1]
          Length = 293

 Score =  171 bits (432), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 99/264 (37%), Positives = 137/264 (51%), Gaps = 13/264 (4%)

Query: 24  NPMGTDGFEFVEYTAADPAAIAGVLELMGFTAVARHRSKNVTLYRQGQINFILNGEPDSN 83
           NP+G DG EF+EY   +P A+  VLE MGF  V RHRS+ V LY QG++N I+N +  + 
Sbjct: 13  NPLGIDGIEFIEYATTEPLALGAVLERMGFEQVGRHRSREVVLYTQGEMNVIVNADATAW 72

Query: 84  AAAFAQVHGASVNAMAFRVKDAAHVYQRALELGAEGVEAKLGPMELNIPAIRGIGGSLLY 143
           A    +V   S++A+A RV+DA   Y+R  ELGA  +  + G MELNIP + G G S++Y
Sbjct: 73  AGFDHEVQATSLSAIALRVRDANEAYRRVTELGAWAIPTRAGAMELNIPGVHGCGDSIIY 132

Query: 144 LVDRYGDHGSIYDVDFQFFPGVERNPKGVGLTYIDHLTHNVMRGAMDTWSSFYTRLFNFR 203
            VDRY D  SIYDVDF+      R    +   +   L   V    +  W  FY+ L  F 
Sbjct: 133 FVDRYRDF-SIYDVDFKPASQERRQTSALAGLHFFGLVQAVQPDRLREWIDFYSTLMGFS 191

Query: 204 EIKYFDIEGKVTGL--RSRAMTSPCGKIRIPINESADDKSQIEEFIKQYNGEGIQHIALG 261
            +     EG+  G+  +   + SPC +  I + E       I      +  E +  + LG
Sbjct: 192 VLP----EGQFFGILPKGSLLVSPCRQFYIQLVEPPAGTEDI------HWEEELLRLGLG 241

Query: 262 TDDIYQTVRALRARGVPLQDTIAT 285
           T D+ Q VR L+ RGV   D   T
Sbjct: 242 TPDVLQAVRQLQERGVVFVDRAPT 265


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.139    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,210,452
Number of extensions: 53323
Number of successful extensions: 144
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 2
Length of query: 369
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 282
Effective length of database: 1,207,925
Effective search space: 340634850
Effective search space used: 340634850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)