BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1539.p (258 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC t... 505 e-144 gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC t... 236 2e-63 gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPa... 235 2e-63 gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC t... 235 3e-63 gi|300311881|ref|YP_003775973.1| amino acid ABC transporter ATPa... 218 3e-58 >gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 258 Score = 505 bits (1300), Expect = e-144, Method: Compositional matrix adjust. Identities = 246/258 (95%), Positives = 252/258 (97%) Query: 1 MSQPVKTMLEVSTLSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFYQP 60 M+ VKTMLEVS LSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFY+P Sbjct: 1 MNASVKTMLEVSNLSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFYRP 60 Query: 61 TSGEITLDGVSIARQPSHQVAQQGLVRTFQNIRLFKSMTVVENLLVAQHQQVNTNLLSGL 120 TSGEI LDG SIARQPSHQVAQQGLVRTFQNIRLFKSMTVVENLLVAQHQQVNTNLLSGL Sbjct: 61 TSGEIMLDGASIARQPSHQVAQQGLVRTFQNIRLFKSMTVVENLLVAQHQQVNTNLLSGL 120 Query: 121 LKTPSYRRSEQEALQRVAYWLEQLGLTSLANREAGTLSYGLQRRVEIARCMITKPRLLLL 180 LKTP+YR+SEQEALQR AYWL+QLGLT+LANREAGTLSYGLQRRVEIARCMITKPRLLLL Sbjct: 121 LKTPAYRKSEQEALQRAAYWLDQLGLTALANREAGTLSYGLQRRVEIARCMITKPRLLLL 180 Query: 181 DEPAAGLNPQEKQELSQLIDRLRREHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTGT 240 DEPAAGLNPQEKQELSQLIDRLRREHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTGT Sbjct: 181 DEPAAGLNPQEKQELSQLIDRLRREHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTGT 240 Query: 241 PEQVRSDERVIKAYLGEE 258 PEQVRSDERVIKAYLGEE Sbjct: 241 PEQVRSDERVIKAYLGEE 258 >gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 236 bits (601), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 117/256 (45%), Positives = 169/256 (66%), Gaps = 4/256 (1%) Query: 1 MSQPVKTMLEVSTLSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFYQP 60 MSQ T+L++ +S RFGGL A++GV + ++ +++ +IGPNGAGKTT FN I+G YQP Sbjct: 1 MSQ---TLLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQP 57 Query: 61 TSGEITLDGVSIARQPSHQVAQQGLVRTFQNIRLFKSMTVVENLLVAQHQQVNTNLLSGL 120 +G LDG + H+VA+ G+ RTFQNIRLF MTV+EN++V H + N+ + Sbjct: 58 DTGTFELDGKPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTKQNVFGAV 117 Query: 121 LKTPSYRRSEQEALQRVAYWLEQLGLTSLANREAGTLSYGLQRRVEIARCMITKPRLLLL 180 + + R E ++ L+ +G+ A R A LSYG QRR+EIAR + T P+LL L Sbjct: 118 FRHKAAREEEAAIREKSQKLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATDPQLLAL 177 Query: 181 DEPAAGLNPQEKQELSQLIDRLRREHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTGT 240 DEPAAG+N EK L +L+ +++ E G +LLIEHD+ L+MG+ +RI V+++GKPI G Sbjct: 178 DEPAAGMNATEKLGLRELLVKIQAE-GKTILLIEHDVKLMMGLCNRITVLDYGKPIAEGV 236 Query: 241 PEQVRSDERVIKAYLG 256 P V+ + VI+AYLG Sbjct: 237 PADVQKNPAVIEAYLG 252 >gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 235 bits (600), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 113/251 (45%), Positives = 169/251 (67%), Gaps = 1/251 (0%) Query: 8 MLEVSTLSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFYQPTSGEITL 67 +L+++ +S FGGL + GV+ V++ E+F +IGPNGAGKTTVFN I+G + +SG I Sbjct: 2 LLQLNDISKNFGGLQVLQGVNFNVRQGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIRF 61 Query: 68 DGVSIARQPSHQVAQQGLVRTFQNIRLFKSMTVVENLLVAQHQQVNTNLLSGLLKTPSYR 127 + I H++ ++G+ RTFQNIR+FK MT++EN++V H +N + S LL +R Sbjct: 62 NDDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHDHLNYGVASMLLNLGGFR 121 Query: 128 RSEQEALQRVAYWLEQLGLTSLANREAGTLSYGLQRRVEIARCMITKPRLLLLDEPAAGL 187 +E+EA +R L + L A+ A +LSYG QR++E AR + TKP+LLLLDEP AG+ Sbjct: 122 NAEKEARERALELLSWVRLDHKAHMLADSLSYGEQRKLEFARALATKPKLLLLDEPVAGM 181 Query: 188 NPQEKQELSQLIDRLRREHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTGTPEQVRSD 247 NP EK EL I + ++ G + +IEHDM +MG+ +RI V+ GK I GTP+Q++++ Sbjct: 182 NPAEKTELMSEIVNI-KQRGFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQIKNN 240 Query: 248 ERVIKAYLGEE 258 + VI+AYLG+E Sbjct: 241 QEVIEAYLGKE 251 >gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 235 bits (600), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 117/256 (45%), Positives = 169/256 (66%), Gaps = 4/256 (1%) Query: 1 MSQPVKTMLEVSTLSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFYQP 60 MSQ T+L++ +S RFGGL A++GV + ++ +++ +IGPNGAGKTT FN I+G YQP Sbjct: 1 MSQ---TLLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQP 57 Query: 61 TSGEITLDGVSIARQPSHQVAQQGLVRTFQNIRLFKSMTVVENLLVAQHQQVNTNLLSGL 120 +G LDG + H+VA+ G+ RTFQNIRLF MTV+EN++V H + N+ + Sbjct: 58 DTGTFELDGKPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTRQNVFGAV 117 Query: 121 LKTPSYRRSEQEALQRVAYWLEQLGLTSLANREAGTLSYGLQRRVEIARCMITKPRLLLL 180 + + R E ++ L+ +G+ A R A LSYG QRR+EIAR + T P+LL L Sbjct: 118 FRHKAAREEEAAIREKSQKLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATDPQLLAL 177 Query: 181 DEPAAGLNPQEKQELSQLIDRLRREHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTGT 240 DEPAAG+N EK L +L+ +++ E G +LLIEHD+ L+MG+ +RI V+++GKPI G Sbjct: 178 DEPAAGMNATEKLGLRELLVKIQAE-GKTILLIEHDVKLMMGLCNRITVLDYGKPIAEGV 236 Query: 241 PEQVRSDERVIKAYLG 256 P V+ + VI+AYLG Sbjct: 237 PADVQKNPAVIEAYLG 252 >gi|300311881|ref|YP_003775973.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 293 Score = 218 bits (556), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 107/251 (42%), Positives = 165/251 (65%) Query: 6 KTMLEVSTLSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFYQPTSGEI 65 + +L++ +S+ FGG+ A+ +S V+E E+ AIIGPNGAGK+++ N I+G Y P G I Sbjct: 40 EVILDLQNISLSFGGVKALTDISFDVREHEIRAIIGPNGAGKSSMINVINGVYHPQKGRI 99 Query: 66 TLDGVSIARQPSHQVAQQGLVRTFQNIRLFKSMTVVENLLVAQHQQVNTNLLSGLLKTPS 125 G A +A+QG+ RTFQNI LFK MTV++N++ ++ ++ + LLS + + Sbjct: 100 LYRGQPRAGMHPSAIARQGIARTFQNIALFKGMTVLDNIMTGRNTKMRSGLLSNAMWWGA 159 Query: 126 YRRSEQEALQRVAYWLEQLGLTSLANREAGTLSYGLQRRVEIARCMITKPRLLLLDEPAA 185 R E E ++V ++ L + + G L YGLQ+RVE+AR + +P +LLLDEP A Sbjct: 160 ARNEEIEHRRKVEQVIDFLEIQHIRKTPVGRLPYGLQKRVELARALAAEPHMLLLDEPMA 219 Query: 186 GLNPQEKQELSQLIDRLRREHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTGTPEQVR 245 G+N +EKQ++ + I + + G ++LIEHDM ++M ISDR++V+++GK I GTPE+V Sbjct: 220 GMNVEEKQDMCRFILDVNDQFGTTIVLIEHDMGVVMDISDRVVVLDYGKKIGDGTPEEVM 279 Query: 246 SDERVIKAYLG 256 +E VIKAYLG Sbjct: 280 GNEDVIKAYLG 290 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.135 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 766,912 Number of extensions: 30828 Number of successful extensions: 527 Number of sequences better than 1.0e-08: 127 Number of HSP's gapped: 321 Number of HSP's successfully gapped: 142 Length of query: 258 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 175 Effective length of database: 1,226,865 Effective search space: 214701375 Effective search space used: 214701375 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)