BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1536.p (376 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310991|ref|YP_003775083.1| branched-chain amino acid ABC t... 673 0.0 gi|300312761|ref|YP_003776853.1| branched-chain amino acid ABC t... 192 4e-50 gi|300309516|ref|YP_003773608.1| branched-chain amino acid ABC t... 164 1e-41 gi|300310948|ref|YP_003775040.1| branched-chain amino acid ABC t... 135 4e-33 gi|300312236|ref|YP_003776328.1| amino acid ABC transporter peri... 113 3e-26 >gi|300310991|ref|YP_003775083.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 373 Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/376 (93%), Positives = 366/376 (97%), Gaps = 3/376 (0%) Query: 1 MKFASRLTKIALAAATFAGLAASAGLAQADTVKIAIAGPLTGAVAQYGDMVKAGALTAIE 60 MKFASRLTKIALAAAT AA AG+A A+TVKIAIAGP+TGAVAQYGDMVKAGALTAIE Sbjct: 1 MKFASRLTKIALAAAT---FAAFAGVAHAETVKIAIAGPMTGAVAQYGDMVKAGALTAIE 57 Query: 61 QINAAGGANGNKFEAVLMDDGCEPKQAVAVANKIVSQGIKYVIGHVCSGSTIPASDIYEN 120 QINAAGGANGNKFEAV+MDD CEPKQAVAVANKIVSQGIKYVIGHVCSGSTIPASDIYEN Sbjct: 58 QINAAGGANGNKFEAVMMDDACEPKQAVAVANKIVSQGIKYVIGHVCSGSTIPASDIYEN 117 Query: 121 EGVVMITPSATAPQLTEAKPHKFIFRTIGRDDQQGPAAARYVIEKIKPKKVAVLHDKQSY 180 EGVVMITPSATAPQLTEAKPHKFIFRTIGRDDQQGPAAARYVIEK+KPKKVAVLHDKQSY Sbjct: 118 EGVVMITPSATAPQLTEAKPHKFIFRTIGRDDQQGPAAARYVIEKLKPKKVAVLHDKQSY 177 Query: 181 GQGVAASVKSALEAAKVPVVLFEGINAGDSDYSAIVTKLKSQGVDFVYFGGYHPEMGLIM 240 GQGVA+SVK+AL+AAKVPVV+FEGINAGDSDYSAIVTKLKSQGVDFVYFGGYHPEMGLIM Sbjct: 178 GQGVASSVKAALDAAKVPVVVFEGINAGDSDYSAIVTKLKSQGVDFVYFGGYHPEMGLIM 237 Query: 241 RQAREQGVKAVFMGPEGVGNKDITAIAGPASEGMLVTLPADFAADPANAALVKAFAAAKR 300 RQAREQG+KAVFMGPEGVGNKDITAIAGPASEGMLVTLPADFAADPANAALVKAFAAAKR Sbjct: 238 RQAREQGIKAVFMGPEGVGNKDITAIAGPASEGMLVTLPADFAADPANAALVKAFAAAKR 297 Query: 301 DANGPFQMPAYSAVKIIADAITGAKSTDPDKVAAYIHANSFKTPIGNVEYDKKGDLKAFK 360 D NGPFQMPAYS VKIIADAI GAKSTDP+KVAAYIHANSFKTPIGNVEYDKKGDLK+FK Sbjct: 298 DPNGPFQMPAYSGVKIIADAIAGAKSTDPEKVAAYIHANSFKTPIGNVEYDKKGDLKSFK 357 Query: 361 FVVFTWHKDATKTEAK 376 FVVFTWHKDA+KTEAK Sbjct: 358 FVVFTWHKDASKTEAK 373 >gi|300312761|ref|YP_003776853.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 380 Score = 192 bits (488), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 135/373 (36%), Positives = 196/373 (52%), Gaps = 12/373 (3%) Query: 1 MKFASRLTKIALAAATFAGLAASAGLAQADTVKIAIAGPLTGAVAQYGDMVKAGALTAIE 60 MK S + I L AA GLA + + VKIA GPL+G A G + GA A++ Sbjct: 1 MKLKSAI--IPLTAAI--GLAFAGAAYSQEVVKIAHVGPLSGPNAHMGKDNENGARMAVD 56 Query: 61 QINAAG---GANGNKFEAVLMDDGCEPKQAVAVANKIVSQGIKYVIGHVCSGSTIPASDI 117 ++NA G G KFE V DD +PKQA AVA K+V Q + VIGH+ SG+TIPAS I Sbjct: 57 ELNAKGFTIGGKKVKFELVGEDDASDPKQATAVATKLVDQKVAAVIGHLNSGTTIPASKI 116 Query: 118 YENEGVVMITPSATAPQLTEAKPHKFIFRTIGRDDQQGPAAARYVIEKIKPKKVAVLHDK 177 Y + G+ ++PSAT P+ T+ + K FR + D Q G A +Y ++K+ K++AV+ D+ Sbjct: 117 YSDAGIPQVSPSATNPKYTQ-QGFKTAFRVVANDAQLGAALGKYAVQKLGTKQIAVIDDR 175 Query: 178 QSYGQGVAASVKSALEAAKVPVVLFEGINAGDSDYSAIVTKLKSQGVDFVYFGGYHPEMG 237 +YGQGVA +AA +V + N +D++AI+T LK + D V+FGG G Sbjct: 176 TAYGQGVADEFAKGAKAAGGTIVGTQYTNDKATDFNAILTSLKGKKPDVVFFGGMDAVGG 235 Query: 238 LIMRQAREQGVKAVFMGPEGVGNKDITAIAGPASEGMLVTLPADFAADPANAALVKAFAA 297 ++RQ ++ G+ A FMG +G+ + +AG V D A + F A Sbjct: 236 PMLRQMKQLGISAKFMGGDGICTGSLPGLAGDGLGDDQVICAEAGGVDEAGKKGMDDFRA 295 Query: 298 AKRDANGPFQM----PAYSAVKIIADAITGAKSTDPDKVAAYIHANSFKTPIGNVEYDKK 353 A + G + AY A +ADA+ A S DP K + S K G + +D K Sbjct: 296 AYKKKFGIDVVYNAAYAYDATMTVADAMAKAGSADPKKYLPELAKISHKGVTGVIAFDAK 355 Query: 354 GDLKAFKFVVFTW 366 GD+K ++T+ Sbjct: 356 GDIKDGSLTLYTY 368 >gi|300309516|ref|YP_003773608.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 378 Score = 164 bits (415), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 117/368 (31%), Positives = 188/368 (51%), Gaps = 9/368 (2%) Query: 6 RLTKIALAAATFAGLAASAGLAQADTVKIAIAGPLTGAVAQYGDMVKAGALTAIEQINAA 65 R++ + + AA+ A + A A + VKI + PLTG A G + G + AIE++NA Sbjct: 4 RVSGLNIIAASLALIPAFAMAQETQVVKIGFSSPLTGPQASAGKDNQGGLMMAIERLNAQ 63 Query: 66 G---GANGNKFEAVLMDDGCEPKQAVAVANKIVSQGIKYVIGHVCSGSTIPASDIYENEG 122 G KF+ + DD +PK VAVA K+ QG+K ++G SG TIPAS +Y + G Sbjct: 64 PITVGGKKIKFDVIAEDDQADPKSGVAVAQKLADQGVKAIVGPYNSGVTIPASRVYNDAG 123 Query: 123 VVMITPSATAPQLTEAKPHKFIFRTIGRDDQQGPAAARYVIEKIKPKKVAVLHDKQSYGQ 182 +V+ T A+ P++T+ + +FR D Q G A Y +++K K+VAV+ D+ +YGQ Sbjct: 124 IVVAT-VASNPKITQ-QGFATLFRVAASDSQLGGKMALYAAKELKFKRVAVIDDRTAYGQ 181 Query: 183 GVAASVKSALEAAKVPVVLFEGINAGDSDYSAIVTKLKSQGVDFVYFGGYHPEMGLIMRQ 242 G+A +A + VV + N +D++AI+T +K + D V+ GGY P+ G I RQ Sbjct: 182 GLAQEFIKVAKANGIDVVSTDFTNDKATDFTAILTSIKGKKPDAVFLGGYAPQGGPIKRQ 241 Query: 243 AREQGVKAVFMGPEGVGNKDITAIAGPASEGMLVTLPADFAADPANAALVKAFAAAKRDA 302 ++ GV MG +G+ + ++ + G A + D A V + K+ Sbjct: 242 MKQLGVDVPLMGGDGICSPEMGRLGGDAIGESVYCTQGGTMLDKAKEGKVFSDEYQKK-Y 300 Query: 303 NGP---FQMPAYSAVKIIADAITGAKSTDPDKVAAYIHANSFKTPIGNVEYDKKGDLKAF 359 N P + + Y + +IA A+ A S DP + + S+K G ++D DLK Sbjct: 301 NRPAETYAVSFYDGMMLIAQAMKQANSVDPKQFGPALAKISYKGVAGQYDFDANHDLKQS 360 Query: 360 KFVVFTWH 367 V+ + Sbjct: 361 PVTVYRFK 368 >gi|300310948|ref|YP_003775040.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 394 Score = 135 bits (341), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 92/338 (27%), Positives = 159/338 (47%), Gaps = 5/338 (1%) Query: 31 TVKIAIAGPLTGAVAQYGDMVKAGALTAIEQINAAG---GANGNKFEAVLMDDGCEPKQA 87 T+ I AGPL+G G ++ G A+ + N G G + + DD +P A Sbjct: 39 TLAIGFAGPLSGPSGGVGKSMQNGVQLALAEANRRGLRIGGKSWQLRLIAQDDRADPATA 98 Query: 88 VAVANKIVSQGIKYVIGHVCSGSTIPASDIYENEGVVMITPSATAPQLTEAKPHKFIFRT 147 VA +V Q + V+GH SG+++ A+ +Y GV+ +TPSA + +LT A + IFRT Sbjct: 99 EFVARSLVQQQVIAVVGHWTSGTSLAAAPVYHRAGVIQVTPSAMSRRLT-AMSYPRIFRT 157 Query: 148 IGRDDQQGPAAARYVIEKIKPKKVAVLHDKQSYGQGVAASVKSALEAAKVPVVLFEGINA 207 I ++ G AA Y ++K++ + + + D+ +GQG+A VV ++ Sbjct: 158 IPNNESLGRLAAGYAVDKLETRTIVTIDDRTPFGQGLAEQFARTASERGAQVVGRYSVSD 217 Query: 208 GDSDYSAIVTKLKSQGVDFVYFGGYHPEMGLIMRQAREQGVKAVFMGPEGVGNKDITAIA 267 SD++A + + + D ++FGG + G++ + R + A M G A Sbjct: 218 KTSDFNAALLEARKLQPDLIFFGGLDWQAGVLAKSIRRLKLHARLMASPGTLGLPFLMRA 277 Query: 268 GPASEGMLVTLPADFAAD-PANAALVKAFAAAKRDANGPFQMPAYSAVKIIADAITGAKS 326 GP + G LV P P + + ++ + + AY A + I I A S Sbjct: 278 GPDANGALVLEPGPPQDKMPGWKSFRQRYSENFDSDMDLYAVFAYEAAQAIIQGIRQAGS 337 Query: 327 TDPDKVAAYIHANSFKTPIGNVEYDKKGDLKAFKFVVF 364 DP+++A +H F+ G V ++++GDL F ++ Sbjct: 338 ADPERIAEAMHRLRFEGVSGPVAFNEEGDLLQPSFTMY 375 >gi|300312236|ref|YP_003776328.1| amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 385 Score = 113 bits (282), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 102/330 (30%), Positives = 155/330 (46%), Gaps = 13/330 (3%) Query: 1 MKFASRLTKIALAAATFAGLAASAGLAQADTVKIAIAGPLTGAVAQYGDMVKAGALTAIE 60 M+F + L I A G S AD +K+ +A LTG A+YG +K G A E Sbjct: 1 MQFNTMLKTIP---ALLIGATLSQAALAAD-IKLGVAEALTGPAAKYGVAIKNGFTLASE 56 Query: 61 QINAAGGANGNKFEAVLMDDGCEPKQAVAVANKIVSQG-IKYVIGHVCSGSTIPASDIYE 119 +INA GG NG+K V+ D+ + ++A+ V K++ Q + V G S S A I Sbjct: 57 EINAKGGVNGDKLALVIEDEQGKKEEAINVFKKLIFQDKVLAVFGPTLSNSAFAADPIAN 116 Query: 120 NEGVVMITPSATAPQLTEAKPHKFIFRTIGRDDQQGPAAARYVIEKIKPKKVAVLH-DKQ 178 VV+ S TA +T P F FR + P + ++ KKVAV++ + Sbjct: 117 AAKVVVFGTSNTADGITAMGP--FTFRNSVMEADVLPVTVKAAVKHFGIKKVAVIYGNDD 174 Query: 179 SYGQGVAASVKSALEAAKVPVVLFEGINAGDSDYSAIVTKLKSQGVDFVYFGGYHPEMGL 238 ++ + K+ LE K+PV E GD D+ A +TK+K+ D + E Sbjct: 175 AFTKSGYDVFKATLEHQKIPVTTTEAYAKGDVDFKAQLTKIKAGNPDAIVCSCLAEEAAN 234 Query: 239 IMRQAREQGVKAVFMGPEGVGNKDITAIAGPASEGMLVTLPADFAAD---PANAALVKAF 295 I+ Q R G+K F+G G+ + + IA A + L+ P ++A+ PAN A + A+ Sbjct: 235 IILQTRALGMKQPFIGGNGLNSPKLFEIAKDAGDNTLMGSP--WSAENQTPANKAFITAY 292 Query: 296 AAAKRDANGPFQMPAYSAVKIIADAITGAK 325 A F AY A+ I+ADA+ K Sbjct: 293 KAKFGADPDQFAAQAYDAMYIVADALKNVK 322 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.131 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 997,584 Number of extensions: 38664 Number of successful extensions: 190 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 168 Number of HSP's successfully gapped: 15 Length of query: 376 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 289 Effective length of database: 1,207,925 Effective search space: 349090325 Effective search space used: 349090325 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)