BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1535.p
         (258 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310990|ref|YP_003775082.1| lipoprotein signal peptide prot...   417   e-118

>gi|300310990|ref|YP_003775082.1| lipoprotein signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 274

 Score =  417 bits (1071), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 196/229 (85%), Positives = 210/229 (91%)

Query: 30  DIRQYQYHQVFISTCRADPRNDTIRMYWKDANGTPLGNFSRLDAHLRSQGQEMVCATNAG 89
           +++QYQYHQVFISTCRADPR DTIRMYWKDANG PL NF RLDAHLRSQGQ+MVCATNAG
Sbjct: 46  EVKQYQYHQVFISTCRADPRTDTIRMYWKDANGVPLANFLRLDAHLRSQGQDMVCATNAG 105

Query: 90  IYDKQLQPLGLYVEGGNQLRRLNTRKNAYGNFYLQPNGVFVLSDRQAYIVETSDYQAELG 149
           IYDKQLQPLGLYVE G QLR+LNTR+NAYGNFYLQPNGVFVL DRQAYIVETSDY AE  
Sbjct: 106 IYDKQLQPLGLYVENGVQLRKLNTRQNAYGNFYLQPNGVFVLGDRQAYIVETSDYAAEGS 165

Query: 150 LWNGVARYATQSGPLMIVEGRINPRFDPASANTVVRNAVCLDAAGMVTLAIARNPISFYD 209
           LWN VAR+ATQSGPLM+VEG+IN RFDP S N VVRNAVCLD AG+VTLAIARNPISF+D
Sbjct: 166 LWNTVARFATQSGPLMLVEGKINHRFDPDSVNMVVRNAVCLDHAGVVTLAIARNPISFFD 225

Query: 210 FASFLRDELKCSDALYLDGSISRMYPTLEANMGPAFGAMIAVVKPYPGK 258
           FA+FLRDELKCSDALYLDGSISRMYPTLEANMGPAFGAMIAVV+ +  K
Sbjct: 226 FATFLRDELKCSDALYLDGSISRMYPTLEANMGPAFGAMIAVVRTHGAK 274


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.137    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 753,391
Number of extensions: 30283
Number of successful extensions: 84
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 1
Length of query: 258
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 175
Effective length of database: 1,226,865
Effective search space: 214701375
Effective search space used: 214701375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)