BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1534.p
         (288 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310988|ref|YP_003775080.1| hypothetical protein Hsero_1659...   415   e-117

>gi|300310988|ref|YP_003775080.1| hypothetical protein Hsero_1659
           [Herbaspirillum seropedicae SmR1]
          Length = 280

 Score =  415 bits (1067), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 193/265 (72%), Positives = 224/265 (84%)

Query: 24  CISILLAALPAAAHADITPLTPAQCSQLQARKVITAANPVPCTRLSTVSFDYTDFDGATR 83
           C  +   AL  AAHADITP++ AQC+++++ KVITA NPVPC RL+TVSFDY D +GA R
Sbjct: 16  CGLLTSLALAQAAHADITPVSAAQCARMKSSKVITAGNPVPCQRLATVSFDYNDSEGAVR 75

Query: 84  QGSVVVLDAVAPQVESLFGELLLRSFPLASARGLEQFDGDDQRSMQANNSSAFNGRPMTG 143
           +G+VVVLDA+AP+VE+LFGELLLRSFPLA A+ +E F+GDDQRSM ANN+SAFNGRPMTG
Sbjct: 76  RGAVVVLDAIAPEVEALFGELLLRSFPLAGAQPMEAFEGDDQRSMAANNTSAFNGRPMTG 135

Query: 144 GGGWSKHAYGAAIDINPQQNPYVSQAGSPTQQVLPPQGAAYLQRNPVQPGMAEDVVGVFY 203
           GGGWSKHAYGAAIDINP QNPYVSQAGSPTQ+VLPP G+AYL+R+PV+ GMAEDV+ VF+
Sbjct: 136 GGGWSKHAYGAAIDINPLQNPYVSQAGSPTQEVLPPAGSAYLERSPVRSGMAEDVISVFH 195

Query: 204 DHGFLVWGGHWKQPIDYQHFEIGSRGFITTLASLPKAQARAEFERYVAGYRQCIHRSGAP 263
           DHGFLVWGGHWKQPIDYQHFEIGSR FI  LASLP+ QARAEF RYV  YRQC H   + 
Sbjct: 196 DHGFLVWGGHWKQPIDYQHFEIGSRAFIQRLASLPRPQARAEFGRYVTAYRQCAHSGASA 255

Query: 264 NAAASDDDAPEDITLREQCAARLRK 288
                D+D PED TLR+QCAARL+K
Sbjct: 256 TGGDEDEDTPEDTTLRDQCAARLKK 280


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.133    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 820,019
Number of extensions: 35939
Number of successful extensions: 101
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 204
Effective length of database: 1,222,130
Effective search space: 249314520
Effective search space used: 249314520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)