BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1528.p
         (282 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310982|ref|YP_003775074.1| EAL domain-containing protein [...   489   e-139

>gi|300310982|ref|YP_003775074.1| EAL domain-containing protein
           [Herbaspirillum seropedicae SmR1]
          Length = 275

 Score =  489 bits (1258), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 242/282 (85%), Positives = 255/282 (90%), Gaps = 7/282 (2%)

Query: 1   MAYQALKAYLQRLDAQHAGAASSSSSSSKVWLDEQGRAAGRFFNTSLTSAFQPVRSFDDG 60
           MAYQAL AYL RL       +  ++++S VWLDEQGRAAGRFFNTSLTSAFQPVRSFDDG
Sbjct: 1   MAYQALNAYLARL-------SKGATTASPVWLDEQGRAAGRFFNTSLTSAFQPVRSFDDG 53

Query: 61  HIVACEAFARSHSAVDDGLHLWKLLDQAASDDESVELDRLCRMLHAINYYRQVGEDAPEL 120
            ++ACEAFARSHSAVDDGLHLWKLLDQAASDDESVELDRLCRMLHAINYYRQVGEDAPEL
Sbjct: 54  QVIACEAFARSHSAVDDGLHLWKLLDQAASDDESVELDRLCRMLHAINYYRQVGEDAPEL 113

Query: 121 HLSVHARLLAAVNNNHGVAYRRILAALELPHERIVLQLPVVTPNQRWLLNYVLDNYRRNG 180
           HLSVHARLLAAVNNNHGVAYRRILAALELPHERIVLQLPVVTPNQRWLLNYVLDNYRRNG
Sbjct: 114 HLSVHARLLAAVNNNHGVAYRRILAALELPHERIVLQLPVVTPNQRWLLNYVLDNYRRNG 173

Query: 181 FRLGVTANSPLEALGLLDKVKPDLIKVDARELADPDSVALLLLRAAEQGVRIFFKRVENR 240
           FRLGV+ANSPLEALGLLDKV+PDLIKVDARELADPDSVALLLLRAAEQGVRIFFKRVE+R
Sbjct: 174 FRLGVSANSPLEALGLLDKVRPDLIKVDARELADPDSVALLLLRAAEQGVRIFFKRVESR 233

Query: 241 QVFDKLAWYCQALAQSTLVQGYLWDVPGARLPEILTGLKDAA 282
           +VF +L  Y QALAQ    QGYLWDVP A LPE    L+DAA
Sbjct: 234 EVFGRLQQYGQALAQPIHAQGYLWDVPAAHLPETFLALRDAA 275


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 907,116
Number of extensions: 37228
Number of successful extensions: 115
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 198
Effective length of database: 1,222,130
Effective search space: 241981740
Effective search space used: 241981740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)