BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1526.p (277 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310980|ref|YP_003775072.1| alkanesulfonates ABC transporte... 486 e-139 gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbasp... 157 9e-40 gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate A... 157 1e-39 gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [H... 154 7e-39 gi|300310542|ref|YP_003774634.1| nitrate transporter ATPase [Her... 153 2e-38 >gi|300310980|ref|YP_003775072.1| alkanesulfonates ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 285 Score = 486 bits (1251), Expect = e-139, Method: Compositional matrix adjust. Identities = 248/277 (89%), Positives = 263/277 (94%) Query: 1 MRNDTQEHRELGRAAGRGVGLRLRAVSKAFSGRTVLHDIDLDIAPGEFVAIVGRSGCGKS 60 MRND QE++++ RAAGRGVG+RLRA+SKAFSGRTVLH+IDLDIA GEFVAIVGRSGCGKS Sbjct: 9 MRNDAQENQQVRRAAGRGVGIRLRALSKAFSGRTVLHEIDLDIAAGEFVAIVGRSGCGKS 68 Query: 61 TLLRLVAQLDAASGGELIYEHEGAGEPEIRIMFQDARLLPWKRVQANVALGLPRQAAPQA 120 TLLRLVAQLDAAS GELIYEH G+G+PE+RIMFQDARLLPWKRVQANVALGLPRQAAPQA Sbjct: 69 TLLRLVAQLDAASCGELIYEHGGSGQPEVRIMFQDARLLPWKRVQANVALGLPRQAAPQA 128 Query: 121 VNALRQVGLEQRAGEWPAVLSGGQRQRVALARALVHDPQLLLLDEPLGALDALTRIEMQT 180 ++ALRQVGL+QRAGEWPAVLSGGQRQRVALARALVHDPQLLLLDEPLGALDALTRIEMQT Sbjct: 129 LHALRQVGLDQRAGEWPAVLSGGQRQRVALARALVHDPQLLLLDEPLGALDALTRIEMQT 188 Query: 181 LIESLWRERGFTALLVTHDVQEAIALADRVLLIEDGQVALDQRIALARPRSRGQAQFAAL 240 LIESLWRERGFTALLVTHDVQEAIALADRVLLIEDG+VALDQRI LARPRSRGQAQFAAL Sbjct: 189 LIESLWRERGFTALLVTHDVQEAIALADRVLLIEDGRVALDQRIDLARPRSRGQAQFAAL 248 Query: 241 EEAILARVLRHPGSEVVTEPSEAIFTPRGVQQVQWAV 277 EEAILARVLRHPGSE E E F PRGVQQVQWA+ Sbjct: 249 EEAILARVLRHPGSESAIEELEPAFAPRGVQQVQWAI 285 >gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 157 bits (397), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 97/235 (41%), Positives = 133/235 (56%), Gaps = 9/235 (3%) Query: 21 LRLRAVSKAFSGRTVLHDIDLDIAPGEFVAIVGRSGCGKSTLLRLVAQLDAASGGELIYE 80 L V+K F V+ + +IA GE VA+VG SGCGKSTLL + A L+ S G + + Sbjct: 3 LSFNNVAKHFGDLHVIEEFTREIASGELVALVGPSGCGKSTLLHMAAGLEKPSSGSVAGD 62 Query: 81 HEG--AGEPEIRIMFQDARLLPWKRVQANVALGL------PRQAAPQAVNALRQVGLEQR 132 + PE +MFQ+ L PW +Q NVAL L ++AA QA L V L+ Sbjct: 63 GQTIRGPHPERTLMFQENALYPWLTLQQNVALALEFQSVDKKKAAEQARVWLENVKLKGF 122 Query: 133 AGEWPAVLSGGQRQRVALARALVHDPQLLLLDEPLGALDALTRIEMQTLIESLWRERGFT 192 +P +SGG RQR ALARA + P+ LLLDEP GALDALTR+ +Q + L R++G T Sbjct: 123 EHYYPHQVSGGMRQRAALARAFISQPKALLLDEPFGALDALTRMTLQDALRDLIRQQGPT 182 Query: 193 ALLVTHDVQEAIALADRVLLIEDGQVALDQRIALA-RPRSRGQAQFAALEEAILA 246 +LVTHDV EA+ LADR+ + + + L ++ ++FAA+ IL Sbjct: 183 VVLVTHDVDEALFLADRIFVFSPRPAKVLKEFNLVHHEKTHDLSEFAAIRRDILC 237 >gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 157 bits (396), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 97/254 (38%), Positives = 141/254 (55%), Gaps = 18/254 (7%) Query: 21 LRLRAVSKAFSGR----TVLHDIDLDIAPGEFVAIVGRSGCGKSTLLRLVAQLDAASGGE 76 +R++ V K F L DI+LDI G+FV ++G SGCGKSTLL +A S G+ Sbjct: 10 IRIQGVHKVFKTDDREVVALKDINLDIPDGQFVCLLGPSGCGKSTLLNAIAGFALPSSGQ 69 Query: 77 LIYEHEGAGEP--EIRIMFQDARLLPWKRVQANVALGLPRQAAPQA------VNALRQVG 128 ++ + + EP + ++FQ+ L PW V+ NVA GL + P+A L ++G Sbjct: 70 ILTDDKVVSEPGPDRGMVFQEYALFPWMTVEQNVAFGLEIKGTPKAEIHQRVTQLLDKLG 129 Query: 129 LEQRAGEWPAVLSGGQRQRVALARALVHDPQLLLLDEPLGALDALTRIEMQTLIESLWRE 188 L +P LSGG RQRVA+AR L D ++L+DEP GALDALTR +Q + +W E Sbjct: 130 LIDFRTRFPKDLSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRRNLQDELLRIWDE 189 Query: 189 RGFTALLVTHDVQEAIALADRVLLIE--DGQVALDQRIALARPRSRGQAQFAALEEAILA 246 T + VTH ++EAI LADR++++ G V D + L R R +F AL+ + Sbjct: 190 FRKTIVFVTHSIEEAIYLADRIVVMTYRPGTVKRDMLVNLPRLRDPADPEFNALKRELGQ 249 Query: 247 RVL----RHPGSEV 256 V+ RH +E+ Sbjct: 250 LVMEEQQRHHNAEM 263 >gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 154 bits (389), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 85/209 (40%), Positives = 127/209 (60%), Gaps = 11/209 (5%) Query: 21 LRLRAVSKAFSGRTVLHDIDLDIAPGEFVAIVGRSGCGKSTLLRLVAQLDAASGGEL--- 77 +++RAV K F ++ +D+DIA GEF +VG SGCGKSTLLR++A L+ +GGE+ Sbjct: 4 VQIRAVKKQFGSTQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEITGGEILIG 63 Query: 78 --IYEHEGAGEPEIRIMFQDARLLPWKRVQANVALGLPRQAAPQAV------NALRQVGL 129 + + + +I ++FQ+ L P V+ N+A L +A A +GL Sbjct: 64 GTVVNNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTLAKKDKAFVDERVKKAADILGL 123 Query: 130 EQRAGEWPAVLSGGQRQRVALARALVHDPQLLLLDEPLGALDALTRIEMQTLIESLWRER 189 Q +P LSGGQRQRVA+ RA+V DPQ+ L DEPL LDA R++M+T I+ L + Sbjct: 124 NQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEIKELHQRL 183 Query: 190 GFTALLVTHDVQEAIALADRVLLIEDGQV 218 T++ VTHD EA+ +AD+++++ DG V Sbjct: 184 KTTSIYVTHDQIEAMTMADQIVVMRDGLV 212 >gi|300310542|ref|YP_003774634.1| nitrate transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 272 Score = 153 bits (386), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 98/243 (40%), Positives = 135/243 (55%), Gaps = 25/243 (10%) Query: 36 LHDIDLDIAPGEFVAIVGRSGCGKSTLLRLVAQLDAASGGELIYEHE--GAGEPEIRIMF 93 L +I+L +A GEFV ++G SGCGKSTLL L+A L S G L+ + G PE ++F Sbjct: 30 LREINLTVAKGEFVTLIGHSGCGKSTLLNLIAGLLKPSEGVLLCANREIGGPAPERAVVF 89 Query: 94 QDARLLPWKRVQANVALGLPR---------QAAPQAVNALRQVGLEQRAGEWPAVLSGGQ 144 Q+ LLPW N+ LG+ R Q + AL VGL + P +SGG Sbjct: 90 QNHSLLPWLSCYENIYLGVERVFGATENRTQLRDRTRAALALVGLSAAENKRPNEISGGM 149 Query: 145 RQRVALARALVHDPQLLLLDEPLGALDALTRIEMQTLIESLWRERGFTALLVTHDVQEAI 204 +QRV +ARAL +P++LL+DEP GALDALTR +Q + + + T ++VTHDV EA+ Sbjct: 150 KQRVGIARALAMEPKVLLMDEPFGALDALTRAHLQDELLKIVAKTDSTVVMVTHDVDEAV 209 Query: 205 ALADRVLLIEDGQVALDQ---RIALARPRSR---------GQAQFAALEEAILARVLRHP 252 L+DR++++ +G A + LARPR R GQ + A LE L R HP Sbjct: 210 LLSDRIVMMTNGPAATIGEVLEVKLARPRDRVVLAQDPEYGQYRTAVLE--FLYRKQAHP 267 Query: 253 GSE 255 E Sbjct: 268 ARE 270 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.136 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 825,582 Number of extensions: 33863 Number of successful extensions: 556 Number of sequences better than 1.0e-08: 127 Number of HSP's gapped: 364 Number of HSP's successfully gapped: 138 Length of query: 277 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 193 Effective length of database: 1,222,130 Effective search space: 235871090 Effective search space used: 235871090 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)